LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu7g0546	ATGTTCTCCCAAAATCTGATTCTCCCTCCCGAAAACCCTAGACCAGCGGCTTCGTTCGCTTCAAAACCCATGAGCAATGAGATCGCAATCGCTGCGCAGAAACCTCCTCCGTCGATTCTCGTTGGGCGCTTCAAGGCACTCCTCAAGCAGCGTGATGACGAACTTAAACTTGTCGCAGGGGTCCCCGTTCCGCCCCCGGCCACCGAAGAAATCGTCCAGATTTACGACCTCCTTTTGTCGGAACTCACCTGTAATTTGAAGCCTATCATCACCGATCTCACAATCATAGCCGAACAGCAGAGGGAGCACGCCAAAGGCATCGCTGACGCAATTTGCGCTCGGATTCTCGAGGTGCCAGCAGATCAAAAGCTTCCCTCACTCTATTTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAAATACTTCTCTTTACGTCTGCCAGAAGTTTTTTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATCCTGCTATGCGGCATCTTTTTGGGACCTGGTCAAAAGTTTTCCCACCTTCTGTCCTACGCAAGATTGAAGTTGAATTGCAATTTTCTCTAGCAGTTAACACCCAATCATCCACCCTGAATTCTGCAAGGGCTTCTGAATCTCCTCGGCCTAGTCATGGCATACATGTTAATCCGAAATACCTGCGCCAGTTGGAGCACTCAACTGTGGATAGTGTTGGTGCTGAAAAGTTGGATTCATCAGGAAATGCCAATAATACAAACTTTGGCATTGTAGCTAGTAAGACACACCAAATTTTATCAGGCAGTAGCAGGCTGGGAATACCCTCTTCTCCCTCAAGAAGTGGACTTGATAGGCCTTTGTCTGGACCCATGGATGATTATGCAGCTGACAGTTCTGCTAACAGATTAATTGAGAGAGACTCTCCTCATCCTTCTGTTGATTATGGAGTAGGCAAGGTATTAGGTAGAGATATGGAGTTGAGTGAATGGCAGCGAAAGCAGTATGCTGGTGATGGTCGTAATCGATTTCCGACTTCTATCACGTACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATCGATGCATATGGCAGTGACAAAAGTCAAGAAACTTCTAGTAGTAAGCCTTTGCTAGTTGAACGGCTTGAGAGAAATGGTATAGACAACAAGGTATTGCCTACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTAACAGATCATAGTAGGAATAACAGTATATTGCCTTCAACTATTGGATTTACCAGGGAAAGGCCTGTTGCAGGTAATGCAGCTTTGTCAGAACATGATTCCAGGAAGGGGGTTTGGTCTAGTGGATCTCAGCTTCCTCCAGTGGATGATTCTTCTGTTGCAGCAGATGATGCATTTGCTTCTTTGGGTTTTCGGCGAGCACCACTGGGACAGGTACCTGGATTCCAAAATCATGTCAGTCTGGGCTCTTCTCATCATCTGTCCAACTCGTCACAACATATCTTTAGTAATAGGGGACGAGCAAGAACTATTTCATTTCCTCCTATTGATAACATTCACAATGCAGATACAAATCCATATCGGGTTCGACCTGCAGTGTCAAGGATGGTTTCTGGCCGTGTTGCTAATGTAGAACCTAGACCATCAGTTTTGCCTGCAACTCTTGAAATAAGACCTTCTGTAAATTTGAATGTCAGTAGACCACCTGCATTAAATCCAATAACTCCATTGCAAAAACATGTTAGGAGTCAGTTTGAAGCTATACATACTAGTAACCCTATTGTGAATCATGTAAATAAATCTTCATTTATGCCAGAGCAGTCATTTGACAGTGTTGAGAACAAGGATGCAAGTATTTTGAAGATACATCAGTTGCCTAATCAGCTTCCTGGACTAATTTCGTCCAACCAGCAAAATCACAGGCAAGCACCACAACTGCAGTTTTTCCCACCATCTCAGGATTCGTCAAACTCACAATTTAGTCATGGGAGTTCTTTGCAGGGACATGGTGCTTCTATAAGTACTGCCATGTCGAATCCGTTACCTGTTATGCAATTTCATTTGCCTCTCCAAAGTATTGCAAATCATCCTTTGCATTTACGGGGTGTAGCCCGTCCACCTTTGCCTCCAGGTCGCCCTCCTGTTCCATCTCAAATGATACCTCATCCAAATGCTTGTCCATTTATGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTTATGTCTCAAGGTGTGATCTCATTGGCTAACCAGCTACCTGCTCAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGATTCGTTATGAGTCTGCTATCAATGCCTTGTATGGTGATCTCCCAAGACAATGCACAACTTGTGGACTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGCCGGAAGCAGAAACCCTCTCGGAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAGTCAGTTCCAGGTTTTTTGCCTACAGAAACCATAGAAGAAAAGAGAGACGATGAAGAGTTGGCTGTTCCAGCAGAAGAGGACCAGAATACTTGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCTATGCTCCCACGGGGACAACAGCAGGCATGGACAGGTCACAGTTAGGCCCTATAATCCATGCTAAATGCAGATCAGAATCTAATATGGCACCATCTGAAGATCTTGGGCTGGATGAAAAGGGTGCTGATGAAGAGGGTACTCAAAGGAAGCGAAGGCGGAGTTGA	2895	0.4473	MFSQNLILPPENPRPAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELKLVAGVPVPPPATEEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPADQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFPPSVLRKIEVELQFSLAVNTQSSTLNSARASESPRPSHGIHVNPKYLRQLEHSTVDSVGAEKLDSSGNANNTNFGIVASKTHQILSGSSRLGIPSSPSRSGLDRPLSGPMDDYAADSSANRLIERDSPHPSVDYGVGKVLGRDMELSEWQRKQYAGDGRNRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPLLVERLERNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSRNNSILPSTIGFTRERPVAGNAALSEHDSRKGVWSSGSQLPPVDDSSVAADDAFASLGFRRAPLGQVPGFQNHVSLGSSHHLSNSSQHIFSNRGRARTISFPPIDNIHNADTNPYRVRPAVSRMVSGRVANVEPRPSVLPATLEIRPSVNLNVSRPPALNPITPLQKHVRSQFEAIHTSNPIVNHVNKSSFMPEQSFDSVENKDASILKIHQLPNQLPGLISSNQQNHRQAPQLQFFPPSQDSSNSQFSHGSSLQGHGASISTAMSNPLPVMQFHLPLQSIANHPLHLRGVARPPLPPGRPPVPSQMIPHPNACPFMSSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKIRYESAINALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEEKRDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMAPSEDLGLDEKGADEEGTQRKRRRS*	965

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu7g0546	964	ProSitePatterns	Zinc finger C2H2 type domain signature.	798	818	IPR013087	-
	Pvu7g0546	964	Pfam	CID domain	86	186	IPR006569	-
	Pvu7g0546	964	CDD	CID_Pcf11	75	192	-	-
	Pvu7g0546	964	MobiDBLite	consensus disorder prediction	401	422	-	-
	Pvu7g0546	964	Gene3D	-	65	192	IPR008942	-
	Pvu7g0546	964	PANTHER	POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4	36	939	-	-
	Pvu7g0546	964	MobiDBLite	consensus disorder prediction	335	359	-	-
	Pvu7g0546	964	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	36	939	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Pvu7g0546	964	MobiDBLite	consensus disorder prediction	934	964	-	-
	Pvu7g0546	964	ProSiteProfiles	CID domain profile.	67	195	IPR006569	-
	Pvu7g0546	964	SUPERFAMILY	ENTH/VHS domain	67	192	IPR008942	-
	Pvu7g0546	964	MobiDBLite	consensus disorder prediction	266	281	-	-
	Pvu7g0546	964	SMART	558neu5	70	192	IPR006569	-
	Pvu7g0546	964	MobiDBLite	consensus disorder prediction	654	680	-	-
	Pvu7g0546	964	MobiDBLite	consensus disorder prediction	266	293	-	-
	Pvu7g0546	964	MobiDBLite	consensus disorder prediction	339	357	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu7g0546	Pvu-Chr7	4310447	4317182	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu7g0546	737	964	C2H2 Transcription Factor Family	AT4G04885	67.982	4.63e-101	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu7g0546	K14400		-	gmx:100794796	1538.09