Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0544 ATGTATCACAATAACAACACCAACTCTTCCAATTCTCAACAACAACCACATCAGTCCACACCAGAAATTCCACCACATAGGACAACCTTGGAGAATGATTTGGAAAGGAACAAAGATGATGAAGCTGCTGGTAATGAAATAGATGTTCCTCCTTCCAGTGACCAAGATCCCGACAGTCAGATGAGAAAGAAGCAGCGTTACCATCGTCACTCACATGATCAGATATTGGAGATGGAATGTTTCTTTAAAGAGTGTCCTCACCCAGATGACAGACAAAGGAGAGAGCTGAGTCGAGAACTCAAATTGAACCCCTTGCAGATCAAGTTCTGGTTCCAAAACAAACGTACCCAAGTGAAGTCTCTACATGAACGCCATGAGAACAATCTTTTGAAGGCTGAGAATGACAAGCTTATTGCAGAGAACATGAGGTACAAGGAGGCACTACTTCATGCTTCTTGCCCTAGATGTGGAGGCCTCACTGGAGAAATGTCCTTTGATGAGCAACAGCTGAGGGCCGAGAATATGCGAATAAGAGAAGAGATTGAAAAGATGTCAGCAAAGATACAGAGATTTGATGGAAAACCTGGGAGTTCCTATTATAACATGCCATCTCAAAACCAGATGATGCCTCCTAAGTCCCTTGATCAGGGAGTTGGAAATTATAGAGCACAGACACATATGATAGGGGAAATGCTCGGTGACAATAATGAATTCCTTGGGACACTCCCAATTTCTAATGATTTTGAAAAAAACATCGTCATGGAGATTGGTAACGTAGCAATGAAGGAACTCACAAACTTGGCTATGGCTGAAAAGACTTTGTGGCTCCCCGGAAGCTGTGGCTGTGAGATTCTGGACCAAGATGAATATCTGAGGTCTTTTCCTAAGGGAATAGGTCCAACACCCCTAGGCATAAAAATAGAAGCTTCAAGGCATTCCGCAGTGGTCATCATGGATTACAATAAACTCGTTGAGATGTTTATGGATGTGAATCAATGGGCAAACATGTTTTGCGGCATAATTTCAAGGGCATGGTTACATCAAGTTCTGGAAATTGGCCTAACAGAAATCTTCGATGGAGCCTCTCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCGCTTGTTCCTGTTCGTGACGACTATTTCGTGAGGTTCTGTAAGAGGAGAAGTGTAGAATCATGGATTATTGTTGATTTTTCCGTGGATCAGCTGCGACCTAGTTCATTCACAAAAAGCCGAAGACGACCCTCTGGTTGCGTGATCACAGAATTGCCAAATGGTTACTCAAAGATTGTTTGGATTGAACATGTAGAACTGGAAGATAATGAGGTGCATGAGCTTTACAAAAGCTATGTTAATTCTGGCCTTGCCTTTGGAGCTAAACGCTGGGTGGCATCATTGGGTAGACAATGCGAACGTCTTGCTAGTGCAATGGCCACAAACATACCGCCCGCAAGCATTGGAGTGCTAACAAACGGCGGCGGTCGAAGAAGTATGATGAGGCTGTCGGAAAGAATGATGATGAGCTTTTGTACTGCTGTTGGTGCTTCCACTGCAAATACTTGGACACTACTAACAGTTGCCGGTGAAGATGTAAGGGTCATGACCAGAAAAAGTGTGGATGATCCAGGCAGACCTTCTGGTATTGTGCTCAGTGCTGCAACTTCTTTGTGGCTCCCACTTCCTTCAACGACCGTTTTTAGTTTTCTGCGATCTGAAAACTCAAGAAATCAGTGGGACATTCTCTCTAACGGAGGACAAGTGGTAGAATTGGCACACATTGCCAATGGTCATGATACTGGGAACTGTGTCTCCTTGCTTCGAGTCAACACTCAGGATTCCAGCCAAAGCAATATGATTATACTTCAAGAGAGTTGCACTGATGCAACGGGATCGTTTGTTGTGTATGCTCCTGTTGATTTAATGTCCATGAATGCTGTGTTGAAAGGTGGAAATCCTGATTGTGTTGCCCTCCTGCCCTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGAACCGATGGTTGGATCTGGAGGTTGCCTTCTAACAGTGGCATTTCAGATATTGGTTGATTCTGTTCCAACTTCAAAACTCTCTGCTAGTTCAGTGACTACTGTTAGCAGTTTAATCAAGTGCACAGTTGAGCGGATCCAAGCTGCAGTGTGCAGTGGCCGCACTAATTAG 2184 0.4437 MYHNNNTNSSNSQQQPHQSTPEIPPHRTTLENDLERNKDDEAAGNEIDVPPSSDQDPDSQMRKKQRYHRHSHDQILEMECFFKECPHPDDRQRRELSRELKLNPLQIKFWFQNKRTQVKSLHERHENNLLKAENDKLIAENMRYKEALLHASCPRCGGLTGEMSFDEQQLRAENMRIREEIEKMSAKIQRFDGKPGSSYYNMPSQNQMMPPKSLDQGVGNYRAQTHMIGEMLGDNNEFLGTLPISNDFEKNIVMEIGNVAMKELTNLAMAEKTLWLPGSCGCEILDQDEYLRSFPKGIGPTPLGIKIEASRHSAVVIMDYNKLVEMFMDVNQWANMFCGIISRAWLHQVLEIGLTEIFDGASQVMSAEFQVPSPLVPVRDDYFVRFCKRRSVESWIIVDFSVDQLRPSSFTKSRRRPSGCVITELPNGYSKIVWIEHVELEDNEVHELYKSYVNSGLAFGAKRWVASLGRQCERLASAMATNIPPASIGVLTNGGGRRSMMRLSERMMMSFCTAVGASTANTWTLLTVAGEDVRVMTRKSVDDPGRPSGIVLSAATSLWLPLPSTTVFSFLRSENSRNQWDILSNGGQVVELAHIANGHDTGNCVSLLRVNTQDSSQSNMIILQESCTDATGSFVVYAPVDLMSMNAVLKGGNPDCVALLPSGFAVLPDGPEPMVGSGGCLLTVAFQILVDSVPTSKLSASSVTTVSSLIKCTVERIQAAVCSGRTN* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0544 727 SMART HOX_1 62 125 IPR001356 GO:0003677
Pvu7g0544 727 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Pvu7g0544 727 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Pvu7g0544 727 Pfam START domain 260 474 IPR002913 GO:0008289
Pvu7g0544 727 ProSiteProfiles START domain profile. 246 477 IPR002913 GO:0008289
Pvu7g0544 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 29 724 IPR042160 -
Pvu7g0544 727 Gene3D - 51 138 - -
Pvu7g0544 727 MobiDBLite consensus disorder prediction 1 70 - -
Pvu7g0544 727 SUPERFAMILY Homeodomain-like 49 119 IPR009057 -
Pvu7g0544 727 SUPERFAMILY Bet v1-like 496 718 - -
Pvu7g0544 727 CDD START_ArGLABRA2_like 250 473 - -
Pvu7g0544 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 29 724 - -
Pvu7g0544 727 Coils Coil 167 187 - -
Pvu7g0544 727 Gene3D - 306 476 IPR023393 -
Pvu7g0544 727 Coils Coil 115 147 - -
Pvu7g0544 727 SMART START_1 255 474 IPR002913 GO:0008289
Pvu7g0544 727 MobiDBLite consensus disorder prediction 1 26 - -
Pvu7g0544 727 MobiDBLite consensus disorder prediction 28 45 - -
Pvu7g0544 727 SUPERFAMILY Bet v1-like 246 476 - -
Pvu7g0544 727 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Pvu7g0544 727 CDD homeodomain 64 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0544 Pvu-Chr7 4294527 4299835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0544 27 721 Homeobox Transcription Factor Family AT4G04890 59.751 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu7g0544 START 3.7e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0544 K09338 - gmx:100793758 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0544 7 4294527 4299835 Pvu7g0544 7 4294527 4299835 ECH
Pvu7g0544 7 4294527 4299835 Pvu2g0497 2 4498127 4507189 ECH
Pvu5g0964 5 27672525 27674096 Pvu7g0544 7 4294527 4299835 ECH
Pvu2g0497 2 4498127 4507189 Pvu7g0544 7 4294527 4299835 PCT