LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu7g0518	ATGTTCATCTTGAAATCGTGTTCAACCCACTTGCTAATTCTCTCCCTGTTTGTGTTTCTAAACTTTGCAAGTGAAGCTGCTCCTACATATAGCAGACATGCCTGCACAAACGATGGATCCTTTTACCGACCCAACACAACATTCCAAACCAACTTGAACATCCTCCTCTCATCCCTAGTCTCCAACGCCACCCTCCACGATGGTTACTACCTCACCAACATCTCCCTTGGAGCCCCTGGGGAGGTCAAGGGGCTCTTCCTCTGCCGCGGTGACGTCACCCCCTCCGTCTGCCACCACTGTGTCGCCGCCGCGGCTGACAACATCACACGCCTTTGCACCAACCAAACAGAGTCTGTAATATGGTATGACGAGTGTATGGTGCGCTACTCCAACCTTTCCTTCCTCAACAACATAGTCCCAAGTATTGACTACAGTTCCGAACAGAGCGTTCCTGACTCCGAAATTACTAGCTTTATCAATTTTCTTGCATCCACGCTGAAGGGTGTGGCGCAGGATGCCGTGAATTCTCCTTCGGCTAAAATGTTCGCCACAAGAGAAGCGATTTTCACGAGCTCAATGACTCTGTACTCCCTGGCGCAGTGTAGGCCTGATTTATCCGCCTTTGATTGTAACATGTGCTTAACAGGCGCCATCAGTAGCCTCGGTGAAGGAAAGCGAGGTGCACGCAACTTGCTTCCTAGTTGTAATGTCAGATATGAATTGTACCCTTTTTACAATGTTTCCGCCGAATCTGCTAAACCGGAGTCTCTTTCCCCATCTTCAGGAAAAAGCAGTATCTCTATAATTGTGGCTATTGCTGTCCCAATTGTTGTTGCGGTGGTACTTTTCATTGTTGGCGTCTGCTTCCTACGCAAGAGGGCAAGCAATAGATACATTAATTCGTTTCGCCAGGATTCAATTGTTGATGATCTTACCGATGTGGAGTCCTTGCAATTTGACTTGGCTACGATTGAAGCTGCCACGAACAGATTTTCGGATGAGAACAAGATTGGCCAAGGTGGATTTGGGGTGGTTTATAAGGGTGTCCTCCCTGACGGACAGGAGATAGCAGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGCGCAGTAGAGTTCAGGAATGAAGCTGCCCTTGTTGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGCCAGGAAAAGATTCTTATCTATGAATACATACCAAACAAAAGCCTTGATTACTTTCTATTTGATTCTATAAAGCAAAGAGAGTTAGATTGGTCAAAACGCTACAAGATTATAGTTGGCATTGCTAGAGGAATTCTTTATTTACATGAAGATTCTCAACTTAGAATTGTTCACCGTGATCTCAAAGCTAGCAATGTTTTACTAGATGAAAATATGAACTCAAAGATTTCTGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGGACTTATGGTTACATGTCTCCAGAATATGCCATGCGTGGTCAGTTTTCTATGAAATCAGATGTGTTCAGCTTTGGTGTCTTGGTTTTGGAGATTGTGAGTGGAAAGAAGAATACTGACTTTTATCAATCCAATCACGCTGATGACCTCTTAATCTTTGCTTGGAAGAAATGGACAGAGCAAACAACTATGGAGTTTCTGGATCCCGCTCTGAGAGGTTCTTGTTCGAGAAATGAAGTAAACAGATGCATCCACATTGGTTTATTATGTGTTCAGGAAAATCCGTCTGACAGACCATCAATGGCCACCATTGCACTTATGCTGAATAGTTATTCAGTTACCTTGTCAATGCCACGACAACCAGCATCTTTTCTGCGTGGAAGAGGTCCTAACAGGCTTAACCAAGGACTTGAATCTGATCAGTCTACCACCGATCAATTTACTTCCTGTTCAGTTCCATGGTCTGTGAATGAAGTATCCCTCACTGAAGTATACCCTCGCTAA	1986	0.4441	MFILKSCSTHLLILSLFVFLNFASEAAPTYSRHACTNDGSFYRPNTTFQTNLNILLSSLVSNATLHDGYYLTNISLGAPGEVKGLFLCRGDVTPSVCHHCVAAAADNITRLCTNQTESVIWYDECMVRYSNLSFLNNIVPSIDYSSEQSVPDSEITSFINFLASTLKGVAQDAVNSPSAKMFATREAIFTSSMTLYSLAQCRPDLSAFDCNMCLTGAISSLGEGKRGARNLLPSCNVRYELYPFYNVSAESAKPESLSPSSGKSSISIIVAIAVPIVVAVVLFIVGVCFLRKRASNRYINSFRQDSIVDDLTDVESLQFDLATIEAATNRFSDENKIGQGGFGVVYKGVLPDGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDYFLFDSIKQRELDWSKRYKIIVGIARGILYLHEDSQLRIVHRDLKASNVLLDENMNSKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSMKSDVFSFGVLVLEIVSGKKNTDFYQSNHADDLLIFAWKKWTEQTTMEFLDPALRGSCSRNEVNRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTLSMPRQPASFLRGRGPNRLNQGLESDQSTTDQFTSCSVPWSVNEVSLTEVYPR*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu7g0518	661	ProSiteProfiles	Gnk2-homologous domain profile.	140	244	IPR002902	-
	Pvu7g0518	661	MobiDBLite	consensus disorder prediction	628	642	-	-
	Pvu7g0518	661	SUPERFAMILY	Protein kinase-like (PK-like)	317	621	IPR011009	-
	Pvu7g0518	661	Gene3D	Phosphorylase Kinase; domain 1	294	406	-	-
	Pvu7g0518	661	CDD	STKc_IRAK	337	603	-	-
	Pvu7g0518	661	ProSitePatterns	Protein kinases ATP-binding region signature.	337	359	IPR017441	GO:0005524
	Pvu7g0518	661	MobiDBLite	consensus disorder prediction	618	642	-	-
	Pvu7g0518	661	Gene3D	-	28	134	IPR038408	-
	Pvu7g0518	661	Gene3D	-	141	244	IPR038408	-
	Pvu7g0518	661	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	5	660	-	-
	Pvu7g0518	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Pvu7g0518	661	SMART	serkin_6	331	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu7g0518	661	ProSiteProfiles	Protein kinase domain profile.	331	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu7g0518	661	Pfam	Protein tyrosine and serine/threonine kinase	334	599	IPR001245	GO:0004672\|GO:0006468
	Pvu7g0518	661	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	5	660	-	-
	Pvu7g0518	661	Pfam	Salt stress response/antifungal	35	131	IPR002902	-
	Pvu7g0518	661	Pfam	Salt stress response/antifungal	156	242	IPR002902	-
	Pvu7g0518	661	ProSiteProfiles	Gnk2-homologous domain profile.	29	134	IPR002902	-
	Pvu7g0518	661	Gene3D	Transferase(Phosphotransferase) domain 1	407	613	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu7g0518	Pvu-Chr7	4054728	4057999	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu7g0518	4	661	Receptor kinase-like Gene Family	AT4G05200	48.472	0.0	625

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pvu7g0518		PK_Tyr_Ser-Thr	4e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu7g0518	-		-	vun:114191833	1124.77