Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0489 ATGTCGAAGATTAAAAAGTCTAGTTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCTAAGAAGAGTCATTTGCAAGTTACGTTCTCTAAACGTCGTTCAGGAGTGTTCAAGAAAGCGAGTGAACTTTGCACCCTTTGTGGAGTAGAGATCGCAATCGTGGTTTTCTCTCCTGCTGATAAGGCCTTCTCTTTTGGGCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCACACGGAACCCTCCACAAGACTCCAGTGCGCACCACCTCGTTGAGGCTCATCGAAATGCGAATGTTCGTGATCTCAACATGCAACTCACTCAGGTTTTTAACCTCTTGGAGGTTGAAAAGAAGCGAGGGGATGATCTGGACCATGTCAGCAAAGCTAGGCAGAGGCAGTTTTGGTGGGAGGGCCCTGTTGATGAGCTTGGATTGCATGAGCTGCTCCAGCTAAAGGCCTCCATTGAAGAGCTCAAGAAGAACATAGAAAAACATGCCACCAAATTCATGATTGACCACTCTTCTGCTATATCTTCTTCTTCGTCAATTCTTGGACCTAATCATGGATTTGGTGCACTTGAACGGTATGATGCCTTTGATAACAAACCTGATGTTGGGATTGCACTTCCTAATGCCCATTATCTCTCCTTTCGAACTGGGTATCTTTGA 672 0.4539 MSKIKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQDSSAHHLVEAHRNANVRDLNMQLTQVFNLLEVEKKRGDDLDHVSKARQRQFWWEGPVDELGLHELLQLKASIEELKKNIEKHATKFMIDHSSAISSSSSILGPNHGFGALERYDAFDNKPDVGIALPNAHYLSFRTGYL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0489 223 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Pvu7g0489 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Pvu7g0489 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 178 - -
Pvu7g0489 223 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Pvu7g0489 223 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Pvu7g0489 223 PANTHER MADS BOX PROTEIN 8 178 - -
Pvu7g0489 223 Coils Coil 149 169 - -
Pvu7g0489 223 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Pvu7g0489 223 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pvu7g0489 223 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pvu7g0489 223 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pvu7g0489 223 SUPERFAMILY SRF-like 10 89 IPR036879 GO:0003677|GO:0046983
Pvu7g0489 223 Gene3D - 89 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0489 Pvu-Chr7 3876555 3877440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0489 6 171 Type I MADS-box Gene Family AT5G60440 53.846 5.59e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu7g0489 SRF-TF 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0489 - - gmx:100793705 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0489 7 3876555 3877440 Pvu7g0489 7 3876555 3877440 ECH
Pvu2g0513 2 4634989 4635636 Pvu7g0489 7 3876555 3877440 PCT