Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0488 ATGAAAAAAAATAAAAATTTGGTGGTTTTCGTTCGACCCTTCAGAGATGCGTGTTGTTTTGGGTGTCTCCATTTGCAGACACAAAACACCTATAAATTCTCTTCTCCACAGCGGCATATTCTATGTTGTGACACCATGGATTCTGGAGCAAAGAAAAGCCGTGGTCGTCAAAAGATTGAGATGAAGAAAATGAGCAACGAGAGCAATCTCCAAGTCACCTTCTCCAAGCGCCGAAGCGGTCTTTTCAAGAAGGCCAGTGAGCTCTGCACCCTCTGCGGAGCCCACGTGGCGCTGGTGGTGTTCTCCCCCGGCGAGAAGGTGTTCTCCTTCGGCCACCCCAACGTGGACGCCGTCATCGACCGATTTCTGGGGCGGGCTCCGGTGCAGGACTCCGGCACCATGCAGTTCATTGACGCCCACCGCATCTCCAACGTGCGTGACCTGAACAAGCAGCTGACTCAGGTGAATGAACTTCTAGAAACGGAGAGGAAGCGCGGGGAGGAGCTGAGCCGGTTGAGGAAGGAGGCGCAGGAGCTGATGTGGTGGACCCGCCCCACCGAGGAGCTGAGTGTGGAGCAGATGGAGCAGTACAAGGCAGCATTGGAGGAGCTGAAGAAGCACGTTGCTCAACTTGCTGAGAGGGCTATGCTTCAGAGTGCTGTAAACCAGGGTCATCAGTTTTTCCCCGGGACTTCTTCCTCTGCCAATTTCGTGCCTCAGTCTCAGCATCAGCATCAGCATCAGCCTCAGCCTCAGCCTCCTCAGGTGTTCACTGCACAGACCATTCCTTCTATCCTTCAGAACTATATGTTCCCTGATGTAACCATCATGCAGCAACAGCATCACGGTTTCGATAACATGGGGATGGGAGGATATGGACCTGGACCTGCTCCTGCTGCTGGATTTTTCTGA 912 0.5318 MKKNKNLVVFVRPFRDACCFGCLHLQTQNTYKFSSPQRHILCCDTMDSGAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDAVIDRFLGRAPVQDSGTMQFIDAHRISNVRDLNKQLTQVNELLETERKRGEELSRLRKEAQELMWWTRPTEELSVEQMEQYKAALEELKKHVAQLAERAMLQSAVNQGHQFFPGTSSSANFVPQSQHQHQHQPQPQPPQVFTAQTIPSILQNYMFPDVTIMQQQHHGFDNMGMGGYGPGPAPAAGFF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0488 303 SUPERFAMILY SRF-like 55 128 IPR036879 GO:0003677|GO:0046983
Pvu7g0488 303 PRINTS MADS domain signature 56 76 IPR002100 GO:0003677|GO:0046983
Pvu7g0488 303 PRINTS MADS domain signature 76 91 IPR002100 GO:0003677|GO:0046983
Pvu7g0488 303 PRINTS MADS domain signature 91 112 IPR002100 GO:0003677|GO:0046983
Pvu7g0488 303 SMART madsneu2 54 113 IPR002100 GO:0003677|GO:0046983
Pvu7g0488 303 Coils Coil 142 179 - -
Pvu7g0488 303 PANTHER MADS BOX PROTEIN 53 247 - -
Pvu7g0488 303 Coils Coil 187 214 - -
Pvu7g0488 303 Gene3D - 134 226 - -
Pvu7g0488 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 63 110 IPR002100 GO:0003677|GO:0046983
Pvu7g0488 303 Gene3D - 66 133 IPR036879 GO:0003677|GO:0046983
Pvu7g0488 303 ProSiteProfiles MADS-box domain profile. 54 114 IPR002100 GO:0003677|GO:0046983
Pvu7g0488 303 CDD MADS_MEF2_like 55 123 IPR033896 GO:0000977|GO:0045944
Pvu7g0488 303 MobiDBLite consensus disorder prediction 228 256 - -
Pvu7g0488 303 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 53 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0488 Pvu-Chr7 3862712 3863884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0488 50 234 Type I MADS-box Gene Family AT5G60440 57.979 2.88e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu7g0488 SRF-TF 3.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0488 - - pvu:PHAVU_007G047900g 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0488 7 3862712 3863884 Pvu7g0488 7 3862712 3863884 ECH