Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0487 ATGTCTTCGGAATCAAAGAAAAGCCGCGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAAAGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGCACCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGCTGCTGACGTCGCTCTTGTTGTGTTCTCCCCCGGAGAGAAGGTCTTCTCCTTCGGTCACCCTAACGTCGACGCCGTGATTGACAGCTACCTCGCGCGGGCCCCGTCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCACCGCCTGGCCAACGTGCGTGACCTGAACGCGCAGCTCACTCAGATCAACGCGCAATTGGAGGCGGGGAGGCAGCACGGGGAGGAGCTGAATCGCATGAAGAAGGACTCGCAGGCCCAGTTATGGTGGGCCCAGCCCATCGAGAAAATGAGCCCGACCCAGGTGGAGCAGTACAAGGCGGCCTTGGAGGAGCTGAAGAAACTGGTTGCGCGTCTTGCTGACAGGGCCATGCTTCAGACTGCAACAAACCAGGTTTGTCAGTTTTTACCCGGGGCTTCTTCTTCTTCTTCCTCTTCCAATCTGCTGCATCATCCACACCCTCCTCAGGTGTTCCCCCAACCCCTGATTCAGCCACCCATGTTTCAGAACTTCATGTTCCCTGATGGGAGCATCGTAAGCCACCATGGGTTTAATCACGTGGAAATGGAAGGATATGCACCTGGACCTGGACCTGCACCTGCTGGTGTTTTCTTTTGA 759 0.5599 MSSESKKSRGRQKIEMKKMSKESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVIDSYLARAPSQDMGTMQFIEAHRLANVRDLNAQLTQINAQLEAGRQHGEELNRMKKDSQAQLWWAQPIEKMSPTQVEQYKAALEELKKLVARLADRAMLQTATNQVCQFLPGASSSSSSSNLLHHPHPPQVFPQPLIQPPMFQNFMFPDGSIVSHHGFNHVEMEGYAPGPGPAPAGVFF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0487 252 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Pvu7g0487 252 MobiDBLite consensus disorder prediction 1 20 - -
Pvu7g0487 252 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pvu7g0487 252 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pvu7g0487 252 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pvu7g0487 252 Gene3D - 22 88 IPR036879 GO:0003677|GO:0046983
Pvu7g0487 252 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Pvu7g0487 252 Coils Coil 149 169 - -
Pvu7g0487 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Pvu7g0487 252 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Pvu7g0487 252 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 186 - -
Pvu7g0487 252 PANTHER MADS BOX PROTEIN 8 186 - -
Pvu7g0487 252 Gene3D - 89 185 - -
Pvu7g0487 252 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0487 Pvu-Chr7 3852475 3853233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0487 6 192 Type I MADS-box Gene Family AT5G60440 51.579 1.06e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu7g0487 SRF-TF 4.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0487 - - gmx:100794751 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0487 7 3852475 3853233 Pvu7g0487 7 3852475 3853233 ECH