Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu7g0470 | ATGGCCAGTTTTGGGGGAACCACGCAAAAGTGCATGGCTTGTGACAAAACGGTGTATCTTGTTGATAAGCTAACTGCTGATGGCCGTGTCTATCACAAGGCCTGCTTCAGATGCCACCATTGCCGCAACACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGGGTGCTATACTGCAGACCTCATTATGATCAACTCTACAAGCGAACTGGCAGCTTGGACAAAAGCTTCGAAGGAACACCCAAAGTTCAGAAACCAGAGAAACCGATCACTGAAAATGAGAACTCTAAGGGCCTCGCAAACGTGTTCTTGGGCACCAGAGACAAATGTGTGTGCTGCAAAAAGACAGTGTATCCCACTGAGCGGGTAACGATTAATGGAACACCCTACCATAAGAGCTGCTTCAAATGTACCTATGGAGGCTGTACTATAAGCTCATCAAACTTTATCACACACGAGGGAAAACTGTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAGGGTAACTACAGTCAGCTGGAGAATGACCAAGTTCCTACCACGGAAGTCGTTGCTTGA | 564 | 0.4628 | MASFGGTTQKCMACDKTVYLVDKLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQKPEKPITENENSKGLANVFLGTRDKCVCCKKTVYPTERVTINGTPYHKSCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVPTTEVVA* | 188 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu7g0470 | 187 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
Pvu7g0470 | 187 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
Pvu7g0470 | 187 | Gene3D | Cysteine Rich Protein | 105 | 174 | - | - | |
Pvu7g0470 | 187 | Gene3D | Cysteine Rich Protein | 6 | 75 | - | - | |
Pvu7g0470 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
Pvu7g0470 | 187 | CDD | LIM1_SF3 | 7 | 69 | - | - | |
Pvu7g0470 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
Pvu7g0470 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 36 | - | - | |
Pvu7g0470 | 187 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
Pvu7g0470 | 187 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
Pvu7g0470 | 187 | PANTHER | OS06G0237300 PROTEIN | 1 | 181 | IPR045268 | GO:0051015 | |
Pvu7g0470 | 187 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
Pvu7g0470 | 187 | PANTHER | LIM DOMAIN-CONTAINING PROTEIN WLIM1 | 1 | 181 | - | - | |
Pvu7g0470 | 187 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - | |
Pvu7g0470 | 187 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
Pvu7g0470 | 187 | SMART | lim_4 | 109 | 161 | IPR001781 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu7g0470 | Pvu-Chr7 | 3683207 | 3685582 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Pvu7g0470 | LIM | 5.6e-11 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu7g0470 | K09377 | - | gmx:100306027 | 366.696 |