Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0456 ATGGCATCTGCGGTGGCCGCCGCGACGGGGCAAGAGTTGTCGAATCCTCCATCGGACGGAATAACGAATCTCCGATTCTCAAATCACAGCGATAATCTCTTGGTTTCCTCATGGGACAAGAGTGTGCGCCTGTATGATGCCAGCGCCAATGTGTTGAGAGGAGAGTTTATGCACGCTGGCCCCGTTCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCTGACAACACTGTTAGACGGCTCGTCTTCAGCTCTAATAAAGAGGATATCCTAGGAAGGCATGATGCGCCTGTTCGTTGTGTTGAGTACTCATATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAAGAGCGCACACTCGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGAAATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAGCAGAAAAGAGAATCTTCGTTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGTGTTGCGATGGAGTTCTTTGACCTCTCAGAAGCTATCCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCCGAGGCCGGAAGGGACATTGTCTATCCTGTAAATGCAATTGCATACCACCCCGTATATGGAACGTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCGAAGTATCCTACTAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGTCTCTTGGCCGTTGCATCAAGTTACACATTCGAAGAAGGGCCCAAAACAGGACTTCAATTCTTCGAACCAGATGCAATCTACGTTCGCAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCAGCGTAA 1038 0.4855 MASAVAAATGQELSNPPSDGITNLRFSNHSDNLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAIQAKKYAFKCHRKSEAGRDIVYPVNAIAYHPVYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKTGLQFFEPDAIYVRSVNEIEVKPKPKVYPNPPA* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0456 345 SUPERFAMILY WD40 repeat-like 16 304 IPR036322 GO:0005515
Pvu7g0456 345 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 6 340 - -
Pvu7g0456 345 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Pvu7g0456 345 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Pvu7g0456 345 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Pvu7g0456 345 MobiDBLite consensus disorder prediction 1 21 - -
Pvu7g0456 345 Gene3D - 6 339 IPR015943 GO:0005515
Pvu7g0456 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Pvu7g0456 345 PANTHER MRNA EXPORT FACTOR AND BUB3 6 340 - -
Pvu7g0456 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Pvu7g0456 345 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Pvu7g0456 345 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Pvu7g0456 345 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Pvu7g0456 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Pvu7g0456 345 SMART WD40_4 273 319 IPR001680 GO:0005515
Pvu7g0456 345 SMART WD40_4 49 86 IPR001680 GO:0005515
Pvu7g0456 345 SMART WD40_4 135 171 IPR001680 GO:0005515
Pvu7g0456 345 SMART WD40_4 88 127 IPR001680 GO:0005515
Pvu7g0456 345 SMART WD40_4 228 270 IPR001680 GO:0005515
Pvu7g0456 345 SMART WD40_4 9 46 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0456 Pvu-Chr7 3549271 3552650 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0456 75 303 U-box Gene Family AT2G33340 23.504 2.89e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0456 K02180 - gmx:100820541 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0456 7 3549271 3552650 Pvu7g0456 7 3549271 3552650 ECH