Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0454 ATGGCTTTGGAGGCTTTGAATTCTCCAACAGCAGCCGCCACTCCCTTCGGTGCCTACCAGGAGGAGGAGGAGGAGCTTGAGCTTCAGTTCCGCGAGCCTTGGTCCAAGAGAAAACGCTCCAAACGACCGCGTTTTGAGACCGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCACAGAGCGGAAACAACAACAACAGTAACAGTAACAGCAACAACACCAACGCTTCTTCTCGCCGCCAAACTCAACAGTCACCGTCACCGTCACAGTCACAGAAAGAACCGTCACCGCCGCTGAAATTATCGCACAGGTGCACCGTTTGCAACAAGGCCTTTCCTTCTTATCAAGCGCTCGGTGGACACAAGGCCAGCCACCGCAAGTCCTCGTCCGAATCCACCTCTGTCTCCGTCGTCGCCAACGACACCGTTGCCGCCTCCACCGTCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACCGGACAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGCAACCACCACAGCAACGCCCACGCCAACAACGGCAGCGCCGTCACTTCCTCCTCCGACGGCGTTGCCGCCTCCTCCCACACGCTCCGTGGGTTCGACCTGAACCTTCCGGCGCCGCTGACGGAGTTCTGGTCGCCGGCGGGGTTCGACTTCAGGAAGAAGGTCGGCGGAGTCGGCGAGCAGGAGGTGGAAAGCCCGTTGCCGGTAACCGCCGCCAAGAAGGCGCGTTTGTTTTCAAGGGAGGACCACGATGACGAAACGGCGTAG 804 0.5995 MALEALNSPTAAATPFGAYQEEEEELELQFREPWSKRKRSKRPRFETEEEYLALCLIMLAQSGNNNNSNSNSNNTNASSRRQTQQSPSPSQSQKEPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTSVSVVANDTVAASTVGGRMHECSICHKSFPTGQALGGHKRCHYDGGNHHSNAHANNGSAVTSSSDGVAASSHTLRGFDLNLPAPLTEFWSPAGFDFRKKVGGVGEQEVESPLPVTAAKKARLFSREDHDDETA* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0454 267 PANTHER ZINC FINGER PROTEIN ZAT10 1 256 - -
Pvu7g0454 267 MobiDBLite consensus disorder prediction 63 98 - -
Pvu7g0454 267 Pfam C2H2-type zinc finger 104 128 - -
Pvu7g0454 267 Pfam C2H2-type zinc finger 154 178 - -
Pvu7g0454 267 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Pvu7g0454 267 MobiDBLite consensus disorder prediction 1 45 - -
Pvu7g0454 267 MobiDBLite consensus disorder prediction 63 101 - -
Pvu7g0454 267 MobiDBLite consensus disorder prediction 237 267 - -
Pvu7g0454 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Pvu7g0454 267 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 256 IPR044653 GO:0003700
Pvu7g0454 267 SMART c2h2final6 154 176 IPR013087 -
Pvu7g0454 267 SMART c2h2final6 104 126 IPR013087 -
Pvu7g0454 267 Gene3D Classic Zinc Finger 102 176 - -
Pvu7g0454 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 176 IPR013087 -
Pvu7g0454 267 MobiDBLite consensus disorder prediction 29 45 - -
Pvu7g0454 267 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Pvu7g0454 267 SUPERFAMILY beta-beta-alpha zinc fingers 104 176 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0454 Pvu-Chr7 3533951 3534754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0454 1 256 C2H2 Transcription Factor Family AT1G27730 41.697 5.43e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g0454 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0454 - - var:108325081 351.288