Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0427 ATGACTTCCAATCGCTCAGGAATTCTTCCTCCTTCTGAGATCCGCTTCTTCAAGATTATTGTGCATACTACTATTCAAATAGGAAAGCTTATGATTCCAAAAGAGTTCACTAGGAAACATGGTGCTAGTTTGTCAAATCCAATGTTTCTCAAACTTCCAGATGGCATTGAATGGGAATTTTCTTGGACTAAAGAAGGTGCTCATAATGTTTGGTTGGAGAAGGGTTGGAAGGAATTTGTGACTTATTACTCCCTTGGCCACGGTCATTTGTTGGTATTCAAATACCAACAAACATGTAAATTGGAGGTAAACATATTCGATGAAAGTGGCGTTGAAATAAATTATCCCTCCAACAACACTCAAAATCATTCTGCTGAAAATTTGTTTGAAGTATCTCCAACAATACCATCTTATCCTGGAACTTCTAAAAAACAAAGGTCACGCATTGGAGTTGTTGGAGAAAGCTCCAATTTACCTCAGCAAGTGTGTCAAGAGAATAGCAGTGGTGCCATCAGTTCTGAAACTCCCTCTTTTATGGTTGTCATGAAGGAATCATACGTGAATGGATATTTACTG 576 0.3819 MTSNRSGILPPSEIRFFKIIVHTTIQIGKLMIPKEFTRKHGASLSNPMFLKLPDGIEWEFSWTKEGAHNVWLEKGWKEFVTYYSLGHGHLLVFKYQQTCKLEVNIFDESGVEINYPSNNTQNHSAENLFEVSPTIPSYPGTSKKQRSRIGVVGESSNLPQQVCQENSSGAISSETPSFMVVMKESYVNGYLL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0427 192 PANTHER B3 DOMAIN-CONTAINING 12 125 - -
Pvu7g0427 192 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Pvu7g0427 192 CDD B3_DNA 15 107 IPR003340 GO:0003677
Pvu7g0427 192 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Pvu7g0427 192 Pfam B3 DNA binding domain 23 108 IPR003340 GO:0003677
Pvu7g0427 192 SMART B3_2 16 109 IPR003340 GO:0003677
Pvu7g0427 192 Gene3D - 10 110 IPR015300 -
Pvu7g0427 192 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0427 Pvu-Chr7 3357791 3358801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0427 16 130 B3 DNA Binding Superfamily AT3G18990 38.261 3.36e-18 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g0427 B3 3.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0427 - - pvu:PHAVU_007G0419001 396.741