Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0426 ATGACTAGTCCAATTGGAGAATTGACCAGCAGTAGCAACGGTACTGCCGGAGGGATGAGTACTGAACAATCTGGATTGTCTGAAAAAACACAGTTAGGGACTGAGCATTTACTAAAGGAACAAAGGGAGTCCGGTACTGTGTTAACCAGTTCAGTTATGGATGAAAAATCCAATCAAGTTTCTGCTAATGCGACAGAGAATTCTGTTATTTTACTGCCTGCACCACCTCAACATGACTTAGAAAAGAATTGTCAGACTGTAGAAGGTTCACACCTTCAACAAAGTACCGATAAAGAAGTATCTTTACAGTTATCTAACGATGAGCCAGAAAACCCATCCCAACCATTGTCTGAAAATGAACCTGTGGAATCCGCACCTGCCTTTGCTGGGGATGGCCAAAAGCAATCAAGTCCAGCTCTAGCGAATACAAGTTATGTGAATAATATGTTGGATCCACCTTCTGGAGATGCTGTGATCAATTGTTCAGAAAAAGTGTCTAATAGCCCCGCCAATTCGCAATTGAGGCGCAAGGGTAAAAAAAACTCAAAATTTTTGAAGAAGACATATATGCTACGATCAGTTGGAAGCAGTGACAGAGCTTTGCGGTCCAAAACAAAAGAAAATCCCAAGACACCTGAACCAAATAGCAATTTGGTCGATTGTAATAATAATAACAACAATGATGGAGTCAAGAAGAAAAGTTTTAAGAAGAAGCGAAAGAGTGGAGAGGTTGGAATTACCGATCAATTCTCCAGAATCAAATCTCACTTAAGATATTTATTAAACAGAATAGGCTACGAGAAAAACTTGATTGATGCTTATTCTGCTGAGGGCTGGAAAGGATACAGTATGGAAAAATTGAAGCCTGAGAAAGAGCTTCAACGGGCCAAGTCTGAAATTATTCGACGCAAATTGAACATCAGGGAACTGTTTCGAAATTTGGATTCATTGTGTACTGAAGGAAAGCTACCAGAGTCTCTATTTGATTCCGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAGTGCCACTCCAAAGAGTTGAGCTCTAATAATGATATAATTCTCTGTGATGGTGTCTGTGACCGTGGCTTTCACCAGCTCTGTTTGGATCCTCCGTTGTTAACTGAAGATATTCCACCTGGTGATGAGGGTTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATGGACCTTATTAATGATTCCTTTGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGGGTTTTTCCTGAAGCAGCTGCTGCTGCTGGAAATAAGACGGATAACAACTCGGGACTCCCTTCTGATGATTCTGACGATGATGATTATAATCCTAATGGTCCAGAGGATGTGAAAGTTGAAGGAGACGAATCAAGTTCTGATGAATCTGACTACGCTTCTGCTTCTGAGAATTTGGAGGGTTCACATGGGGATCAATACTTGGGCCTTCCATCTGATGATTCTGATGATGGTGATTATGACCCTGCTGCCCCAGATGCTGACTCTAAAGTCAATGTAGAAAGTTCAAGCTCTGACTTCACATCTGACTCTGATGATTTACCTGCTGCAATTGTGGAGAATACGTCCCCTGGACAGGATGGTGAAATCAGATCTGCATCATTGGATGATGTCAAGTGCTTGAACAGTTATGGCAAAAGAAAGGGTAAAGCTGGTAAGAAGCTATCTATGGCTGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGTCAAGAAGGTTCTACACCTGTTTCTGGGAGAAGGAACTTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGGCATACCACAGCGATACTAGTGAGGATGAAGATTGGACAGCCACTGTTACTCCAAGTAGAAAGAAGAAAGGCAATGCAACTCCAGTGTCACCAGATGGAAATGCTTCAAATAATTCCATGCACACTCCTAAGAGGAATGGCCATCAGAAGAAATTTGAAAATACAAAAAATTCACCTGCTAAATCACTTGATGACCATGTGAAATCTGATTCTAGGAAACAAAAGTCTAAATCTTCAGCATACAAAAGATTAGGAGAAGCTGTTGTTGAGAGACTTCACATATCTTTTAAAGAAAATCAGTATCCAGATAGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTGTCAGCAGGTTGCCAAATGGTTTGACAATACACGATGGAGCTTCCGGCATTCATCACAAATGGAAACCAATTCAGGTAGAAATACTTTACAGCAATCTACTGATAGTAGAGCTGAAAATGAGGGGGGTGAATGTGAATTAAGGTCCCCAGAGGTCAGTGGAGAAATATCAAAAGCCCCAAGCTCTGGAAAAAGAAAGCATTTGTCAGAACACCAACTATCTGAAACACAGCTGGATATCAATGGCTTGGCAACAAGTTCACCAAATGCTCATCAAACCCAAATGGGCAAGAAAATGAAGACAAGAAGAAGGAAATGA 2481 0.4119 MTSPIGELTSSSNGTAGGMSTEQSGLSEKTQLGTEHLLKEQRESGTVLTSSVMDEKSNQVSANATENSVILLPAPPQHDLEKNCQTVEGSHLQQSTDKEVSLQLSNDEPENPSQPLSENEPVESAPAFAGDGQKQSSPALANTSYVNNMLDPPSGDAVINCSEKVSNSPANSQLRRKGKKNSKFLKKTYMLRSVGSSDRALRSKTKENPKTPEPNSNLVDCNNNNNNDGVKKKSFKKKRKSGEVGITDQFSRIKSHLRYLLNRIGYEKNLIDAYSAEGWKGYSMEKLKPEKELQRAKSEIIRRKLNIRELFRNLDSLCTEGKLPESLFDSEGEIDSEDIFCAKCHSKELSSNNDIILCDGVCDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCMDLINDSFGTSLSISDTWERVFPEAAAAAGNKTDNNSGLPSDDSDDDDYNPNGPEDVKVEGDESSSDESDYASASENLEGSHGDQYLGLPSDDSDDGDYDPAAPDADSKVNVESSSSDFTSDSDDLPAAIVENTSPGQDGEIRSASLDDVKCLNSYGKRKGKAGKKLSMADELSSLLEPDSGQEGSTPVSGRRNLERLDYKKLYDEAYHSDTSEDEDWTATVTPSRKKKGNATPVSPDGNASNNSMHTPKRNGHQKKFENTKNSPAKSLDDHVKSDSRKQKSKSSAYKRLGEAVVERLHISFKENQYPDRTTKESLAQELGLTCQQVAKWFDNTRWSFRHSSQMETNSGRNTLQQSTDSRAENEGGECELRSPEVSGEISKAPSSGKRKHLSEHQLSETQLDINGLATSSPNAHQTQMGKKMKTRRRK* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0426 826 MobiDBLite consensus disorder prediction 622 647 - -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 210 229 - -
Pvu7g0426 826 PANTHER HOMEOBOX PROTEIN HAT3.1 150 787 - -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 739 759 - -
Pvu7g0426 826 Pfam PHD-finger 340 395 IPR019787 -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 795 816 - -
Pvu7g0426 826 Pfam Homeodomain 691 735 IPR001356 GO:0003677
Pvu7g0426 826 MobiDBLite consensus disorder prediction 650 686 - -
Pvu7g0426 826 SMART HOX_1 681 743 IPR001356 GO:0003677
Pvu7g0426 826 MobiDBLite consensus disorder prediction 1 31 - -
Pvu7g0426 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 397 IPR013083 -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 43 70 - -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 739 826 - -
Pvu7g0426 826 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 150 787 - -
Pvu7g0426 826 ProSiteProfiles 'Homeobox' domain profile. 679 739 IPR001356 GO:0003677
Pvu7g0426 826 MobiDBLite consensus disorder prediction 592 621 - -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 507 521 - -
Pvu7g0426 826 CDD homeodomain 693 740 IPR001356 GO:0003677
Pvu7g0426 826 SMART PHD_3 340 393 IPR001965 -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 425 541 - -
Pvu7g0426 826 ProSiteProfiles Zinc finger PHD-type profile. 338 395 IPR019787 -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 1 139 - -
Pvu7g0426 826 Gene3D - 675 747 - -
Pvu7g0426 826 SUPERFAMILY Homeodomain-like 678 742 IPR009057 -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 157 241 - -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 572 686 - -
Pvu7g0426 826 ProSitePatterns Zinc finger PHD-type signature. 341 392 IPR019786 -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 160 175 - -
Pvu7g0426 826 MobiDBLite consensus disorder prediction 86 120 - -
Pvu7g0426 826 CDD PHD_PRHA_like 340 392 IPR045876 -
Pvu7g0426 826 SUPERFAMILY FYVE/PHD zinc finger 330 398 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0426 Pvu-Chr7 3345492 3354004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0426 194 736 Homeobox Transcription Factor Family AT3G19510 45.965 1.49e-129 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pvu7g0426 PHD 2.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0426 - - pvu:PHAVU_007G041800g 1568.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0426 7 3345492 3354004 Pvu7g0426 7 3345492 3354004 ECH