Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0389 ATGGCGAAGCTCTCGGAGACCTACGCGTGCGCACCCTCAACGGAGCGCGGCCGCGGCATCCTCATCTCCGGCGACTCCAAAACCAACAACGTCCTCTACTGTACCGGGCGATCCGTCATCATCCGCAACCTCGAGAACCCGCTCCAGGTCTCCGTCTACAGCGAGCATGCCTACCCCGTCACAGTGGCGCGTTACTCTCCCAACGGTGAGTGGATCGCCTCCGCCGATGTCTCCGGCACCGTCCGCATTTGGGGGACTCATAACGACTTCGTTCTGAAGAACGAGTTTCGGGTCCTGTCGGGTCGGATCGACGACCTCCAGTGGTCCTTCGACGGAATGAGGATCGTCGCTTGTGGGGACGGCAAGGGCAAGTCGTTCGTTCGCGCCTTTATGTGGGATTCAGGTTCCACTGTTGGTGATTTTGATGGCCATTCGCGCCGGGTTTTAAGCTGTGCATTTAAACCAACAAGGCCATTCCGCATTGTCACATGTGGAGAAGATTTTTTGGCGAATTTTTATGATGGTCCACCGTTCAAGTTCAATATGTCCATCAGGGACCATTCGAATTTTGTCAACTGTGTGAGATTTTCTCCAGATGGGAGCAAATTTATTACTGTTAGCTCGGATAGGAAGGGCATTATATATGATGGAAAGACAGGGAACAAACTTGGCGAGTTGTCCACGGAGCATGGTCACAAGGGCAGCATATATGCAGTTAGTTGGAGTCCTGACAGCAAACAGGTTCTTACTGTGTCCGCTGACAAATCAGCAAAAATATGGGATATTGTTGAGGATGGTAGTAGTGGAACCCTTAATAAGACTTTGGCATCTACTGAATCTGGCGAGGTGGAGGATATGCTTGTTGGTTGTCTTTGGCAGAATGATTTTCTGCTTACTATATCTCTTGGTGGCATGACTAATTTATATTCTGCTAAGGATTTAGATAAAAGCCCGTGCTCAATATCTGGTCACATGAAAAATGTCACCATTTTGTCTCTTCTTAAACGAAGTGAAAAGATGCTTTTGACCAGCAGCTATGATGGAGTGATCATTAGATGGATTCCAGGCAAGGGATACAGTGGCAAGTTTGAGAGTAAACAATTTGGATTAATCAAATTGTTAGTAGCTGGCCAAGATGAAGTTATTGCTTCTGGATTTGACAACAAGGTATACAGAGTTCCTTTTGAAGGGGATAATTTGGGTCCTGCTGAAACTCTTGATGTTGGAAGTCAGCCAAAGGATTTGAGCCTTGCACTTGATAGCCCTGAGCTTGCCATTGTTGCAATTGAATCTGGAGTTGTCTTGCTAAAGGGTTCAAAAATTCTTTCCACTGTAAAGCTGGACTTTGTTGTGACCGCGGCTGCTCTTTCACCTGATGGCAGTGAAGCAATTGTAGGAGGGCAAGACGGTAAATTGCGCATCTATTCAGTATCAGGGGATACAGTTACTGAACAGAGTGTACTCGAAAAGCACCGAGGCGCCATTACCGTAATCAAATACTCTCCAGATGTTTCCATGTTTGCGTCAGCTGATTTGAATCGTGAAGCTGTTGTGTGGGACCGTGCTTCCAAAGAGGTGAAGCTTAATAACATGTTGTTTAATACTGCTCGTATTAACAATCTAGCTTGGTCTCCTGATAGCACACTGGTAGCTACTGGTTCACTTGATACATGTGTCATCATATATGAAATTGGAAAACCGGCTTCAAGTCGCAGAACCATAAAGGGTGCTCATTTAGGTGGAGTTTACGGATTAACTTTTATTGATCAGGATAGAGTGGTCAGTTCTGGGGAGGATGGTTGTGTTCGAGTCTGGACTTTGATTTCTGAATAA 1833 0.4637 MAKLSETYACAPSTERGRGILISGDSKTNNVLYCTGRSVIIRNLENPLQVSVYSEHAYPVTVARYSPNGEWIASADVSGTVRIWGTHNDFVLKNEFRVLSGRIDDLQWSFDGMRIVACGDGKGKSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIVTCGEDFLANFYDGPPFKFNMSIRDHSNFVNCVRFSPDGSKFITVSSDRKGIIYDGKTGNKLGELSTEHGHKGSIYAVSWSPDSKQVLTVSADKSAKIWDIVEDGSSGTLNKTLASTESGEVEDMLVGCLWQNDFLLTISLGGMTNLYSAKDLDKSPCSISGHMKNVTILSLLKRSEKMLLTSSYDGVIIRWIPGKGYSGKFESKQFGLIKLLVAGQDEVIASGFDNKVYRVPFEGDNLGPAETLDVGSQPKDLSLALDSPELAIVAIESGVVLLKGSKILSTVKLDFVVTAAALSPDGSEAIVGGQDGKLRIYSVSGDTVTEQSVLEKHRGAITVIKYSPDVSMFASADLNREAVVWDRASKEVKLNNMLFNTARINNLAWSPDSTLVATGSLDTCVIIYEIGKPASSRRTIKGAHLGGVYGLTFIDQDRVVSSGEDGCVRVWTLISE* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0389 610 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Pvu7g0389 610 Gene3D - 7 606 IPR015943 GO:0005515
Pvu7g0389 610 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 610 - -
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 84 IPR001680 GO:0005515
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Pvu7g0389 610 Gene3D - 11 340 IPR015943 GO:0005515
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
Pvu7g0389 610 CDD WD40 50 353 - -
Pvu7g0389 610 SMART WD40_4 219 261 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 134 174 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 177 216 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 89 133 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 46 85 IPR001680 GO:0005515
Pvu7g0389 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 84 - -
Pvu7g0389 610 Pfam WD domain, G-beta repeat 538 562 IPR001680 GO:0005515
Pvu7g0389 610 Pfam WD domain, G-beta repeat 577 605 IPR001680 GO:0005515
Pvu7g0389 610 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Pvu7g0389 610 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Pvu7g0389 610 Pfam WD domain, G-beta repeat 224 261 IPR001680 GO:0005515
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 529 IPR001680 GO:0005515
Pvu7g0389 610 SUPERFAMILY WD40 repeat-like 294 606 IPR036322 GO:0005515
Pvu7g0389 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 610 - -
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Pvu7g0389 610 SUPERFAMILY WD40 repeat-like 29 353 IPR036322 GO:0005515
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 262 IPR001680 GO:0005515
Pvu7g0389 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0389 Pvu-Chr7 3038091 3046587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0389 184 262 Eukaryotic Initiation Factors Gene Family AT2G46280 27.848 2.47e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0389 K24736 - gmx:100798693 1130.16