Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0384 ATGCTAGGTTCATTACCTATATTGCCTCTCCCTGCCCCTCCTGCTGATGGAAATCTAGGTCCTCTCCCTGAGTCTCAAGTATCCGAGGAGAGGACTTATAATGAGGAGCAGAACAAATCAAATTCAGCTTCTGTTCCAGTGCCCGCAACAGTTGCAACCCACACAAGAACTATTGGAATTATACATCCTCCTCCAGATATTAGGACCATTGTTGATAAAACGTCCCAGTTTGTGGCTAAAAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACGGGCAATGTCAAGTTCAATTTTCTTAACTCATCAGATCCCTATCATGCATATTATCAACATCGGTTGGCTGAATTTCGTGCTCAGAATCAATCATCAGGGCAGCAAACTCCTTCCCAGTCCACTGACTCGGGTGTTCCTGAGTCAGCTCCAACTGCCCCTGTCCCGGATAGTAATGGCATAGCAGCAGTAGAAAAGTTCGATGTTTCTGCCCAGTTTAAACCTGTTAGGAAAGTACTTGAACCCCCTGAAGCAGAACAGTATACTGTTCGGCTTCCTGAAGGAATTACAGGTGAAGAGCTGGATATTATAAAGCTTACAGCACAATTTGTGGCTCGAAATGGGAAATCTTTTTTGACAGGGTTGACAAGTAGGGAAGTTAATAATCCCCAGTTCCACTTTTTGAAACCTACCCACAGCATGTTTACGTTTTTTACTTCTCTTGCGGATGCATATTCGAAGGTTTTGATGCCACCAAAGGGATTGACAGAGAAGCTGACGAAGAGTGTGTCTGATATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAGCGCTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAACAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGATTTTGTTGATGAGGAGGATGAAGAATTACCACCTCCAATGACTATTGAGGTGGTTATCAGGAGAAGCAAGGCGTCAGCCACGGAAGATGATACTGTTGAGCCCGAAAAGGAGGTTGAAATGGAAATGGACGAGGAAGAGGCTCTGCTTGTTGAAGAGGGCATGAGAGCTGCTAGTTTGGAAGACTCAGATGATGGGAAGCAAAATGAAGTTAGAGTTACTGAAGACCCTGAACCACCAATGAGAATTGTTAAGAACTGGAAGAGACCCGAGGAGAGGATTCCTGCTGAAAGAGATTCAGCTAAGTTCGTTGTTTCTCCTATCACCGGTGAGCTAATTCCTATTAGCGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAGACAACTTTGGCTGCGGATGATGAAATTTCAAGAAACATAGTTGGTCTTGCCCGGACCCGTCCTGATATTTTTGGTACCACAGAAGAAGAGGTCTCCAATGCTGTCAAGGCAGAGATTGAGAAGATAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACACAGGTAGTATTGGGCGTACTGCAAACCAAGCCATGTCACAGAATATTGGAAACGAGGACCAAAATGATACATCTAATAATGAGGCCAAGAACCTTCTTGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTTCGTCCACTCCCGCCACCACCTGGATTGGCTTTAAATCTTCCACGTGGTCCAGTCCAATATTCTGTTCCTCATAGTGGTGGCCTTCCAATTCCTCCACCCAGGCCACTTTCGATGATGCCATCTGTTCGGCCTGCTCCTCCTCCTCCAATGCAGATGAATTCTGGACAGCAGTCAGTTATGGGTGGTCAACCGCACCCAATGCCTCCAATGCATATGAATAACCAAGGATTTCAAATACCTCCACCACCAGGATCCCAGTTCACTCCTGTTCCAGTTCCTCGACCTTATGTTCCTCTTCCTGTTCCACAATCAGTTATGCCTATGATGCACCCACCACCTTTGCCTCAGGGAGTGCCACCACCGCCGCCGCCAGAAGAGGCTCCTCCCCCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAACTTGATGATTATGCTCTGATCCCTGAAGATCAATTTCTGGCTCAACATCCTGGACCTGTTCGTATCAGTGTATCTGTTCCTAATGTTGATGAAGGAAGTCTCAAGGGACAAGTTCTGGAAATTACAGTGCAATCTTTGTCTGAAACCGTTGGTAGTTTGAAAGAAAAAATTGCAGGGGAGATTCAGCTCCCTGCTAATAAGCAGAAATTGAGCGGAAAACCTGGCTTTCTCAAGGATAACATGTCACTTGCCCATTACAATCTTGGTGGAGGGGAAACACTTACCCTCACCTTAAGAGAGCGGGGTGGTAGAAAGAGATGA 2427 0.4536 MLGSLPILPLPAPPADGNLGPLPESQVSEERTYNEEQNKSNSASVPVPATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLAEFRAQNQSSGQQTPSQSTDSGVPESAPTAPVPDSNGIAAVEKFDVSAQFKPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLTKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFVDEEDEELPPPMTIEVVIRRSKASATEDDTVEPEKEVEMEMDEEEALLVEEGMRAASLEDSDDGKQNEVRVTEDPEPPMRIVKNWKRPEERIPAERDSAKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQNIGNEDQNDTSNNEAKNLLGPAAPPPRPGMPSVRPLPPPPGLALNLPRGPVQYSVPHSGGLPIPPPRPLSMMPSVRPAPPPPMQMNSGQQSVMGGQPHPMPPMHMNNQGFQIPPPPGSQFTPVPVPRPYVPLPVPQSVMPMMHPPPLPQGVPPPPPPEEAPPPLPEEPEPKRQKLDDYALIPEDQFLAQHPGPVRISVSVPNVDEGSLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNLGGGETLTLTLRERGGRKR* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0384 808 MobiDBLite consensus disorder prediction 669 691 - -
Pvu7g0384 808 ProSiteProfiles SURP motif repeat profile. 196 238 IPR000061 GO:0003723|GO:0006396
Pvu7g0384 808 SMART ubq_7 729 801 IPR000626 GO:0005515
Pvu7g0384 808 MobiDBLite consensus disorder prediction 587 608 - -
Pvu7g0384 808 SUPERFAMILY Surp module (SWAP domain) 43 123 IPR035967 GO:0003723|GO:0006396
Pvu7g0384 808 SUPERFAMILY Ubiquitin-like 701 806 IPR029071 -
Pvu7g0384 808 MobiDBLite consensus disorder prediction 1 48 - -
Pvu7g0384 808 Pfam Surp module 68 119 IPR000061 GO:0003723|GO:0006396
Pvu7g0384 808 Pfam Surp module 194 245 IPR000061 GO:0003723|GO:0006396
Pvu7g0384 808 MobiDBLite consensus disorder prediction 530 564 - -
Pvu7g0384 808 MobiDBLite consensus disorder prediction 338 358 - -
Pvu7g0384 808 Pfam Pre-mRNA splicing factor PRP21 like protein 263 477 IPR022030 -
Pvu7g0384 808 Pfam Ubiquitin family 736 803 IPR000626 GO:0005515
Pvu7g0384 808 MobiDBLite consensus disorder prediction 530 545 - -
Pvu7g0384 808 MobiDBLite consensus disorder prediction 669 699 - -
Pvu7g0384 808 MobiDBLite consensus disorder prediction 585 608 - -
Pvu7g0384 808 MobiDBLite consensus disorder prediction 122 141 - -
Pvu7g0384 808 PRINTS Proline rich extensin signature 551 567 - -
Pvu7g0384 808 PRINTS Proline rich extensin signature 589 610 - -
Pvu7g0384 808 PRINTS Proline rich extensin signature 651 668 - -
Pvu7g0384 808 PRINTS Proline rich extensin signature 673 698 - -
Pvu7g0384 808 ProSiteProfiles Ubiquitin domain profile. 749 805 IPR000626 GO:0005515
Pvu7g0384 808 MobiDBLite consensus disorder prediction 122 151 - -
Pvu7g0384 808 Gene3D Surp module 189 247 IPR035967 GO:0003723|GO:0006396
Pvu7g0384 808 MobiDBLite consensus disorder prediction 549 564 - -
Pvu7g0384 808 SMART surpneu2 194 247 IPR000061 GO:0003723|GO:0006396
Pvu7g0384 808 SMART surpneu2 68 121 IPR000061 GO:0003723|GO:0006396
Pvu7g0384 808 CDD Ubl_SF3a120 721 801 IPR035563 -
Pvu7g0384 808 Gene3D - 697 807 - -
Pvu7g0384 808 Gene3D Surp module 54 127 IPR035967 GO:0003723|GO:0006396
Pvu7g0384 808 Coils Coil 280 300 - -
Pvu7g0384 808 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 116 IPR045146 GO:0003723|GO:0045292
Pvu7g0384 808 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 155 808 IPR045146 GO:0003723|GO:0045292
Pvu7g0384 808 SUPERFAMILY Surp module (SWAP domain) 172 246 IPR035967 GO:0003723|GO:0006396
Pvu7g0384 808 PANTHER SPLICING FACTOR 3A, PROTEIN 7 116 - -
Pvu7g0384 808 PANTHER SPLICING FACTOR 3A, PROTEIN 155 808 - -
Pvu7g0384 808 ProSiteProfiles SURP motif repeat profile. 70 112 IPR000061 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0384 735 805 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 6.59e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0384 K12825 - gmx:100797261 1207.59