Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0342 ATGGGTTTGCAGAGCGAACTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTGTTGGCGCAGATAGCCATGTGCGTCAACTACCTCCGCTCCATGCTCCTCGCGCTGTTGCAATCCCTAGGTCTCGCCCGATTCCACACCCACCAGATCGTCGACGACCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGACTCATCATGCTCTCCGATCAGCTCAAGCTCAGCAATCAATTCTTCTTCCACGAAGGAGCCGCCCACGACCACCCCTGCGTGGTGTGCCAGGCCGCCTTCCAGGACGGCGACCAGCTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCGCTGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGCCCCCTCTGCCGCTCCCCGCTCCTCTCCGACGACCGCGTGGCCCTCACCGAACGCCGCCTCGGCCAACAACTCATCTCTTGGTTCTCCCTTCACTGA 486 0.6337 MGLQSELNDVSSGSIPLLVLAQIAMCVNYLRSMLLALLQSLGLARFHTHQIVDDRFLAAVGSGLAGLIMLSDQLKLSNQFFFHEGAAHDHPCVVCQAAFQDGDQLRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLLSDDRVALTERRLGQQLISWFSLH* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0342 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Pvu7g0342 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 143 IPR013083 -
Pvu7g0342 161 CDD mRING-H2-C3H2C2D_ZSWM2 92 134 - -
Pvu7g0342 161 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 159 - -
Pvu7g0342 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 159 - -
Pvu7g0342 161 SMART ring_2 92 133 IPR001841 -
Pvu7g0342 161 SUPERFAMILY RING/U-box 84 140 - -
Pvu7g0342 161 Pfam Ring finger domain 92 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0342 Pvu-Chr7 2660576 2661519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0342 1 161 C3H Transcription Factor Family AT1G15100 47.239 3.60e-46 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0342 K16282 - gmx:100803789 277.715