Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0293 ATGAATGCAAACATGAGTGAGAAAGTGAAATGGTTCAATGATCAAAAGGGGTTTTGGTTCATAATCCTGGACGAAGTTTCAAGGATTTTTTTTGTTCATCAATTGCAGATCAAATATGACGATTTTCGAAGTCTTGCCGAGGCAGAATCCGTTGAGTTTGCCATTAAATTTGACAGTGACAGACGCACCAAGATGATCAATATCACCGATTAA 213 0.3756 MNANMSEKVKWFNDQKGFWFIILDEVSRIFFVHQLQIKYDDFRSLAEAESVEFAIKFDSDRRTKMINITD* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0293 70 SUPERFAMILY Nucleic acid-binding proteins 8 62 IPR012340 -
Pvu7g0293 70 PANTHER COLD SHOCK PROTEIN 2 4 69 - -
Pvu7g0293 70 Gene3D - 2 70 IPR012340 -
Pvu7g0293 70 Pfam 'Cold-shock' DNA-binding domain 8 68 IPR002059 GO:0003676
Pvu7g0293 70 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Pvu7g0293 70 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Pvu7g0293 70 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Pvu7g0293 70 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 69 - -
Pvu7g0293 70 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Pvu7g0293 70 CDD CSP_CDS 8 69 IPR002059 GO:0003676
Pvu7g0293 70 PIRSF Cold_shock_A 1 70 IPR012156 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0293 Pvu-Chr7 2233858 2235086 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pvu7g0293 CSD 2.1e-14 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0293 - K09250 pvu:PHAVU_007G028900g 144.821