Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0268 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGCAGCCGCAAGACGCGGTTTCTGAAGTGAAGAAAAGTATTGAATCTGCTCAGGGTGCAGATGTCTATCCTGCTGCACTGCAAATGCTAATTCACCAAGGGAAAGTTCTGAAGGATGCTACTACCTTGGAGGAGAATAACGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCCAAGAGTAAGAGCACATCTGCTGACGGATCTACTACTTCTACTGCACCATCGACCAAGACACCACAGACTAGTGCACCTCCTACTTCAACAACGCCAGTTTCAACTGCACCTCAAGCTCCTGCTGCAACTGAGGCACTGCCTGCAACTGTTACTGTACCTGTATCCTCACCTTCTCCAGCGCCAGCTCCTCCTGCACCTGCTTCTATTTCTTCAGGAACTCCTGTGGAGGGGTCTGATGTCTATGGCCTAGCGGCATCCAATCTCGTTGCTGGTAGCAACTTGGAGGGAACAATTCAGCAGATTATTGACATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCTTATAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCTGGTATCCCTGAGCAAGCTGAAGCTCCAGCTGTAGCCAGAGCACCTGCAGGTGCTCAACCTGCAAATCCTCCTGCTGCTGCGGCTCCACAGACAGCACAACCTGCTCCGGTTACCTCAACTGGACCTAATGCTAATCCTTTAGACCTTTTCCCGCAGGGCCTTCCCAACGTGGGTGCTGGTGCTGCTGGTGCTGGCTCATTGGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGGGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAAGGGAACATATTGGGGCAGCTGGCTGGTGGCATGCCACAAGCAGTGTCCGTCACTGCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTTGATCGTGCAATCGTATTGGAGGTCTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCGAACTACCTTTTAGATCACATTCACGAGTTTGATGAACAATAG 1209 0.4888 MKVFVKTLKGTHFEIEVQPQDAVSEVKKSIESAQGADVYPAALQMLIHQGKVLKDATTLEENNVAENSFIVIMLSKSKSTSADGSTTSTAPSTKTPQTSAPPTSTTPVSTAPQAPAATEALPATVTVPVSSPSPAPAPPAPASISSGTPVEGSDVYGLAASNLVAGSNLEGTIQQIIDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPAVARAPAGAQPANPPAAAAPQTAQPAPVTSTGPNANPLDLFPQGLPNVGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAGGMPQAVSVTAEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHIHEFDEQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0268 402 CDD UBA1_Rad23_plant 163 212 - -
Pvu7g0268 402 Gene3D - 162 212 - -
Pvu7g0268 402 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pvu7g0268 402 MobiDBLite consensus disorder prediction 223 254 - -
Pvu7g0268 402 MobiDBLite consensus disorder prediction 79 113 - -
Pvu7g0268 402 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 401 - -
Pvu7g0268 402 SMART CBM 274 317 IPR006636 -
Pvu7g0268 402 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pvu7g0268 402 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Pvu7g0268 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Pvu7g0268 402 MobiDBLite consensus disorder prediction 79 151 - -
Pvu7g0268 402 MobiDBLite consensus disorder prediction 129 143 - -
Pvu7g0268 402 SUPERFAMILY UBA-like 338 400 IPR009060 GO:0005515
Pvu7g0268 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 167 210 IPR015940 -
Pvu7g0268 402 SMART ubq_7 1 75 IPR000626 GO:0005515
Pvu7g0268 402 Gene3D - 349 396 - -
Pvu7g0268 402 Gene3D - 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pvu7g0268 402 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pvu7g0268 402 Gene3D - 1 80 - -
Pvu7g0268 402 SUPERFAMILY UBA-like 166 219 IPR009060 GO:0005515
Pvu7g0268 402 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Pvu7g0268 402 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Pvu7g0268 402 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Pvu7g0268 402 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Pvu7g0268 402 SUPERFAMILY XPC-binding domain 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pvu7g0268 402 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 401 - -
Pvu7g0268 402 Pfam UBA/TS-N domain 172 207 IPR015940 -
Pvu7g0268 402 Pfam UBA/TS-N domain 357 392 IPR015940 -
Pvu7g0268 402 CDD Ubl_Rad23 1 74 - -
Pvu7g0268 402 SMART uba_6 357 394 IPR015940 -
Pvu7g0268 402 SMART uba_6 169 209 IPR015940 -
Pvu7g0268 402 TIGRFAM rad23: UV excision repair protein Rad23 1 399 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0268 Pvu-Chr7 1918305 1922127 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0268 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 3.26e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0268 K10839 - gmx:100814162 569.311