Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0247 ATGCTCCCCATCACCTGCATTCTTTTAATGTGCCTTCTAAGTTCTTTCTCCCCCCCAATTGAAGCTCTCCTCAACCTCACCGTACTACCCCACCAACACCCTCACCCTGAATCCATAGTCCACGAACTTCAACGGAAGGTTAATGTCTCGTTATGGAGAAGGCAAACACTGTCCAAGGACCAACAAGCCTCGTGTCTCACCGGAAACCCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGGGGGCGAACCGGCAGAAGCTGGCGGAGTGCGGCATCGGGTTCGGCAAAGACACCGTGGGCGGGAAGGGCGGGCAGATCTACGTGGTGACGGACTCGTCGGACCGCGACCCGGCCAACCCCGTTCCCGGCACGCTCCGGCACGCCGTCATCCAAGACGAGCCTCTCTGGATCGTGTTCGCCGCGGACATGACCATAAACCTTAAACACGAGCTCATCTTCAACAGCTTCAAAACCGTCGACGGAAGGGGCGCCAACGTCCACGTCACGGGCCACGGCTGCATCACGCTCCAGTACGTCTCCGACGTCATCATCCACAACATCCACGTCCACCACTGCACGCCCTCAGGGAACACCAACATACGGGCTAGTCCAACGCACGTTGGGTGGAGAGGGAGATCGGACGGCGACGGCATCTCCATCTTCAGCTCCCGGAAGATCTGGATCGACCACTGCTCCCTCTCTTACTGCACGGACGGCCTGATCGACGCCATAATGGGCTCCACCGCGATTACCATTTCCAACAACCACTTCGCCCACCACGACGAGGTCATGCTCTTGGGACACAACGACAAGTACTCCCCAGACAGAGGCATGCAAGTCACCATTGCGTTCAACCACTTCGGCGAGGGTTTGGTTCAGCGCATGCCACGTTGCAGACTCGGCTACATCCACGTCGTCAACAACGATTTCACCCAGTGGGAGATGTACGCCATCGGCGGCAGCGCCAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCCCCCTCCAACCCTGATGCCAAAGAGGTGACGAAGCGCGTGGAAACAGACGACAGGGAGTGGAGTGGTTGGAATTGGAGAACGGAAGGGGACGTAATGGTAAATGGAGCATTCTTTGTACCGTCGGGTGCAGGGATGAGTGCACAGTACGCGGAGGCCACCAGTGTGCAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGTGTCTTCGGTGATCCCAGGGATAACGGGGATCTGTATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGAGCAACCAGCAAGGGCAACAGTGCGGGGTCCAGTGACGACGGAGACTTCTTCGGAATGATATTCAGAGGAAGCAGCAGCCATGCAGCGCCACCGTCACCACCGTCTTCCTCCACTGTATTTGTCACAACCTTTTTGTCTCTTCTAATTATTCTGATTTTGGACACTTCCACCACCAACCATCCCTTTCTATGA 1482 0.5722 MLPITCILLMCLLSSFSPPIEALLNLTVLPHQHPHPESIVHELQRKVNVSLWRRQTLSKDQQASCLTGNPIDDCWRCDPNWGANRQKLAECGIGFGKDTVGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSFKTVDGRGANVHVTGHGCITLQYVSDVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSNPDAKEVTKRVETDDREWSGWNWRTEGDVMVNGAFFVPSGAGMSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNSAGSSDDGDFFGMIFRGSSSHAAPPSPPSSSTVFVTTFLSLLIILILDTSTTNHPFL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0247 493 Pfam Pectate lyase 151 332 IPR002022 -
Pvu7g0247 493 PANTHER PECTATE LYASE 7 430 - -
Pvu7g0247 493 Gene3D - 68 410 IPR012334 -
Pvu7g0247 493 SMART amb_all 143 340 IPR002022 -
Pvu7g0247 493 SUPERFAMILY Pectin lyase-like 47 385 IPR011050 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Pvu7g0247 493 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Pvu7g0247 493 PANTHER PECTATE LYASE 18-RELATED 7 430 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0247 Pvu-Chr7 1763697 1767760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0247 1 455 Polysaccharide Lyase AT3G53190 64.163 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0247 K01728 - gmx:100808438 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0247 7 1763697 1767760 Pvu7g0247 7 1763697 1767760 ECH