Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0239 ATGTTTCACGAGAGCAGCGTGACTCGGTGGCAGACTCAGCCGGTTCAGCCCACTGAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGCGCTCTGCTCCTCGTGCCGGAGGACCTCCCCGACCGCTGGAACCAGATTGCCGGCCACGTTCCCGGTATGTCTCCGGCGGAGGTCAGGGAGCACTACGACGCGCTCGTCCACGACGTCTTCGAGATCGACTCTGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGCGCCGCAACTCAGTGGCGGTGCCGGGAATTCTGCGTGGGACAGCGCGAATCAGATCTCATTCGGATCCAAACCCAAGCAGGGCGACAGCGAAAGGAAGAAAGGCACGCCTTGGACTGAAGAGGAACATAGGCTGTTTCTGATCGGGCTGAGTAAATTTGGAAAGGGAGATTGGAGAAGCATTTCAAGAAACGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGTCATGCTCAGAAATACTTCCTTCGGCAGAATTCAGGGAAGAAGGAGAGGAAAAGATCAAGCATCCATGACATAACCACAGTGGACAGTAACTCTGTGCCTGTGCCCATTGACCAGAACTGGGTTCCTCCTCCTGGTGCTTCAATGCAGCAGTCACAAGACATGCTGCAGTACCCTTCAAGCAACATGCATGATCAAATGGGTCCATTTGGGTATTCAAGCTATGGCTTTGAAATGTAA 723 0.5408 MFHESSVTRWQTQPVQPTEWTRYHDKLFERALLLVPEDLPDRWNQIAGHVPGMSPAEVREHYDALVHDVFEIDSGRVEVPSYVDDSAPQLSGGAGNSAWDSANQISFGSKPKQGDSERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGASMQQSQDMLQYPSSNMHDQMGPFGYSSYGFEM* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0239 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 172 IPR017930 -
Pvu7g0239 240 SMART sant 16 68 IPR001005 -
Pvu7g0239 240 SMART sant 120 170 IPR001005 -
Pvu7g0239 240 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 15 240 - -
Pvu7g0239 240 CDD SANT 123 168 IPR001005 -
Pvu7g0239 240 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 171 IPR006447 GO:0003677
Pvu7g0239 240 Gene3D - 15 79 - -
Pvu7g0239 240 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Pvu7g0239 240 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Pvu7g0239 240 Gene3D - 122 173 - -
Pvu7g0239 240 SUPERFAMILY Homeodomain-like 14 65 IPR009057 -
Pvu7g0239 240 CDD SANT 19 62 IPR001005 -
Pvu7g0239 240 MobiDBLite consensus disorder prediction 90 111 - -
Pvu7g0239 240 MobiDBLite consensus disorder prediction 84 124 - -
Pvu7g0239 240 SUPERFAMILY Homeodomain-like 118 172 IPR009057 -
Pvu7g0239 240 ProSiteProfiles SANT domain profile. 119 172 IPR017884 -
Pvu7g0239 240 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 240 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0239 Pvu-Chr7 1617070 1619096 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu7g0239 Myb_DNA-binding 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0239 - - gmx:547481 407.912