Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0232 ATGGCTTCTCATCTCGGTCAAGGAAGTGCAACCATACCAATCCACTTTTTCAAGATTATTCTTGAAACTAATGTTGAAAGGATAAAACTACCCAACAAGTTCACAAATAGATATGGGGGTTCTTTGCCAAATCCAGTGTCTCTTAGGGCTTCAGACTTCAAGGAATGGGTGGTGTATTGGACAGAAAAGAATGGTGAGGTTTGGTTTGAAAAGGGTTGGAAAGAGTTTGCTGAAAACTATTCCTTAAGTTATGGATATTTTGTGGTGTTCAAGTACAGTGGAACCTCCCAAATTGATGTACTCATACTTGATAAAAGTGCCCTAGAGTTAGATTGTTTGTCTTCTGCTAATGCATCAGTTAACCCCGTGAATGCAACCGAGAAGGAGCAAAATGCAAGACCAGTGGCATCATCAATGAGTGGAAATTGTTTGAATCTGCCGAGAACACTAAAAGCTCGAAAAATAAGCAACAAATTTAAATCAAAACATCCCTATTTCACTCTTGTGATAGAGCCTTCTAACTTAGAAGAAAATGCTTCGGTAAATCTTAATATGAAGTCATTGTTTGACCAGTTTATTATAGGTATTATGAGTTTCTTTCTCACTGTTGTTTGTTGCTTTACACAGAAATATGTGCCCAAGTTTTTGGATAACATGAACTGCGAGAAGAATGTGGTGTTGCAGATGGCTAATAGGTCCTCGTATGCTTGGTATGTGAAGTTACTCAGTGGTGGTGACAGATATGATAGGTTCTCTTCTGGTTGGTCTATCTTTGCAAAAGAGAGTAAATTGGAAGTTGGTGACATTTGTATCTTTGAGTTGGTTGAACCTGCAGGTCCACTGCTTCGAGTTCATGTTTTCAGAAGCTAG 870 0.3862 MASHLGQGSATIPIHFFKIILETNVERIKLPNKFTNRYGGSLPNPVSLRASDFKEWVVYWTEKNGEVWFEKGWKEFAENYSLSYGYFVVFKYSGTSQIDVLILDKSALELDCLSSANASVNPVNATEKEQNARPVASSMSGNCLNLPRTLKARKISNKFKSKHPYFTLVIEPSNLEENASVNLNMKSLFDQFIIGIMSFFLTVVCCFTQKYVPKFLDNMNCEKNVVLQMANRSSYAWYVKLLSGGDRYDRFSSGWSIFAKESKLEVGDICIFELVEPAGPLLRVHVFRS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0232 289 Gene3D - 11 107 IPR015300 -
Pvu7g0232 289 Gene3D - 148 289 IPR015300 -
Pvu7g0232 289 CDD B3_DNA 15 104 IPR003340 GO:0003677
Pvu7g0232 289 SUPERFAMILY DNA-binding pseudobarrel domain 199 288 IPR015300 -
Pvu7g0232 289 CDD B3_DNA 210 288 IPR003340 GO:0003677
Pvu7g0232 289 SMART B3_2 16 106 IPR003340 GO:0003677
Pvu7g0232 289 SMART B3_2 200 289 IPR003340 GO:0003677
Pvu7g0232 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 150 288 - -
Pvu7g0232 289 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 132 - -
Pvu7g0232 289 Pfam B3 DNA binding domain 26 98 IPR003340 GO:0003677
Pvu7g0232 289 Pfam B3 DNA binding domain 218 288 IPR003340 GO:0003677
Pvu7g0232 289 SUPERFAMILY DNA-binding pseudobarrel domain 14 106 IPR015300 -
Pvu7g0232 289 PANTHER B3 DOMAIN-CONTAINING 10 132 - -
Pvu7g0232 289 PANTHER B3 DOMAIN-CONTAINING 150 288 - -
Pvu7g0232 289 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Pvu7g0232 289 ProSiteProfiles B3 DNA-binding domain profile. 225 289 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0232 Pvu-Chr7 1578378 1579773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0232 16 116 B3 DNA Binding Superfamily AT3G18990 31.068 2.28e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g0232 B3 2.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0232 - - pvu:PHAVU_007G022900g 588.956