Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0211 ATGGCCACATCATCTTCCTCAGCATCACTCTTTGGATTCAGAGAAGACGATCAGAACCAGATGAAGCAGCAGCATTCCTTGACACCATCTTCCTCAACAACTCCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAGCCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACCGATGTGACTGTGGTACACTCTTCTCCAGGAGAGACAGCTTCATCACCCACAGGGCGTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACAGCCGCCAAACCTTGGCGCCGCCATTGGCACCCACCTCTTCGGAACCGCCGCCAACACCATCCCTCTTAACCTTTCTCAGGTCGCTTCTCACATCTCCAACATCCAAGACCCCACCACCCAACCAACAGAACTCCTCCGCCTAGGCGGCGCCGCCGCCGCAAGAACCGGCCAATTCGACCACCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAACAACCCTTCTTCATCGAACCTAACCAAAACTACCACCCCGACCAACAACAGCAACAACAAGGGCTGCTCCAAAACAAACCCTTCCAACAAGGACTAATGCAACTCTCTGATCACCTCACCAACAACACCAACTCACCCTTCAACCTTCCCTTCCTTTCAGCCACCACCAATGCTTCATTCTCAGAAAACTTCAACAACAGCAGCAGCAACAACAACAACGAGGGCACTAACTTCTTCACAACTTCAAGCGCTCCTTCTCTCTTCAGCAACAACGCTGTGAGCGCAAACGCCAATGCAAACGCGCTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCCGCACAGATGGGTGCCTCGTCGAGCAACAGCACCGCTTCGCTGCTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAATCCGAGCAACACAGGGTGAATGCTGCGGGCTACGGCGGCGGAATGTTCGGAGGGAACGTGAACGAGCAGAGCAACAGCAACCTGCAAGACTTGATGAACTCGTTCGCTGTGAGTGGAAACTCTTCCATTTTCGAAGGTGGGTTTGAAGCATATGATCATAACAACAGGGAGGGAAAAGTGCATGCAATGAGCGGAAGCAGCAGCATTGGAGGGTCTGATAGACTCACCCGCGATTTTCTGGGTGTGGGTCAGATAGTTAGAGGCATGAGTGGGAGTGGAGGAGTTCCACACAGAGAACACCATGGCTTCAACTTGAGTTCTTTGGAAGCAGCAGATCAAAGAAATAACAGTAACAGCAATAATAATAACAGTGCTGCGCCGTCAGGTCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1680 0.5077 MATSSSSASLFGFREDDQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGAAIGTHLFGTAANTIPLNLSQVASHISNIQDPTTQPTELLRLGGAAAARTGQFDHLLGSPFRPSQQQQPFFIEPNQNYHPDQQQQQQGLLQNKPFQQGLMQLSDHLTNNTNSPFNLPFLSATTNASFSENFNNSSSNNNNEGTNFFTTSSAPSLFSNNAVSANANANALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSGSKSEQHRVNAAGYGGGMFGGNVNEQSNSNLQDLMNSFAVSGNSSIFEGGFEAYDHNNREGKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVPHREHHGFNLSSLEAADQRNNSNSNNNNSAAPSGQAFGGGGGNFQ* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0211 559 SMART c2h2final6 147 167 IPR013087 -
Pvu7g0211 559 SMART c2h2final6 112 142 IPR013087 -
Pvu7g0211 559 SMART c2h2final6 71 93 IPR013087 -
Pvu7g0211 559 MobiDBLite consensus disorder prediction 532 559 - -
Pvu7g0211 559 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Pvu7g0211 559 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Pvu7g0211 559 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 511 - -
Pvu7g0211 559 MobiDBLite consensus disorder prediction 1 55 - -
Pvu7g0211 559 Gene3D Classic Zinc Finger 54 119 - -
Pvu7g0211 559 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Pvu7g0211 559 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 511 - -
Pvu7g0211 559 MobiDBLite consensus disorder prediction 532 548 - -
Pvu7g0211 559 MobiDBLite consensus disorder prediction 1 32 - -
Pvu7g0211 559 Gene3D Classic Zinc Finger 125 204 - -
Pvu7g0211 559 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0211 Pvu-Chr7 1452205 1460067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0211 10 513 IDZ Gene Family AT2G02070 48.116 9.02e-136 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu7g0211 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0211 K25870 - gmx:100799389 759.599