Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0199 ATGGCTTCTCTGCCAATCAACTTCTTCAAAGTTATTCTTAAAACTAATCTTGAAAGGCTTAAAATACCCAACAAATTCAGTTGCAAATATGGAAGTGGCTTGCCAAATCCCTTGTTCATGAAGCCTCCAGATGGAACAGAATGGAAAGTGAATTGGGCAGAAGACAAGGGTGAGATTTGGCTGGAAAAGGGTTGGAAAGAATTTGTGGAACATTATTCCCTAGATCAAGGACATTTTATTTTCTTTAAATATGAAGGAACTTCCCAGATTCATGTAATCATACTTGACCAGAGTGCACTAGAAATAGACTATCCTTGTGGCAATGGAGATGAAAACGACAACCTTGTTAAAACCGAGGAGGAATCCGACATGGTTTTGGATGAAGGGCAAGATGTGAAGGATGAACAAATAAGGGGTGAGAAGTGTGGTGAAAGAACTTCATCTTTGAACAGGCCTACGCAATCTAGAGCAAGGGAAGTAGCATGCAACTTCGTCTCATGCAATCCCTTTTTCACAGTTTTCATAAGACCTTCTCATACAGCAACATATCGGCTGAGCGTTCCAGATTTGAGAGGCCTTATTGGGGAGAAGGAGAGGTATGCGATGCTGGAGCTTGGAGAAAGAGGGTGGAAAGTGAAGTTGATAGCTAATAATAGCAGCTATTTTTCACATCACAGGTTCTCTACTGGCTGGTACTTGTTTTTACGTGAGACTGAATTGCAATCTGGAGACGTTTGTGTATTTGAACTCATCAGCAAAGAGGATTGTGTTTTCAAAGTTCATGTTTTCAAAAATCACACATAA 804 0.403 MASLPINFFKVILKTNLERLKIPNKFSCKYGSGLPNPLFMKPPDGTEWKVNWAEDKGEIWLEKGWKEFVEHYSLDQGHFIFFKYEGTSQIHVIILDQSALEIDYPCGNGDENDNLVKTEEESDMVLDEGQDVKDEQIRGEKCGERTSSLNRPTQSRAREVACNFVSCNPFFTVFIRPSHTATYRLSVPDLRGLIGEKERYAMLELGERGWKVKLIANNSSYFSHHRFSTGWYLFLRETELQSGDVCVFELISKEDCVFKVHVFKNHT* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0199 267 CDD B3_DNA 169 264 IPR003340 GO:0003677
Pvu7g0199 267 SUPERFAMILY DNA-binding pseudobarrel domain 7 105 IPR015300 -
Pvu7g0199 267 CDD B3_DNA 8 96 IPR003340 GO:0003677
Pvu7g0199 267 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pvu7g0199 267 SUPERFAMILY DNA-binding pseudobarrel domain 167 265 IPR015300 -
Pvu7g0199 267 Gene3D - 150 266 IPR015300 -
Pvu7g0199 267 Pfam B3 DNA binding domain 15 95 IPR003340 GO:0003677
Pvu7g0199 267 Pfam B3 DNA binding domain 170 265 IPR003340 GO:0003677
Pvu7g0199 267 PANTHER B3 DOMAIN-CONTAINING 5 265 - -
Pvu7g0199 267 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 265 - -
Pvu7g0199 267 SMART B3_2 170 266 IPR003340 GO:0003677
Pvu7g0199 267 SMART B3_2 8 98 IPR003340 GO:0003677
Pvu7g0199 267 Gene3D - 5 99 IPR015300 -
Pvu7g0199 267 ProSiteProfiles B3 DNA-binding domain profile. 170 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0199 Pvu-Chr7 1341550 1343708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0199 8 121 B3 DNA Binding Superfamily AT1G49475 37.931 3.02e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g0199 B3 3.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0199 - - gmx:102661781 350.517