Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0198 ATGGCTGCTCATCCTCCCATGGACCATGCCATCCTGCCTATACGTTTCTTCAAGACCATTCTTAAATCAAATCTTCAAAGGCTTCAAATCCCCAAGAAATTTACAAACAGATACGGAGAAAACTTGTCAAATCCAGTGTTTCTCCGGCCACCAGATGGTACTCAATGGAAAGTGTACTGGAGCAAACAGAAGGGTGAGATTTGGTTCGAAAAGGGTTGGAAGCAATTTGTTGAACACTATTCCCTTGATCATGGTTACTTTGTTTTCTTTACATTTGATGGAACTTCTGAGATTGACGTACTCATAGTTGATCAGAGTTCCCTAGATATGCAATATCCTTCTTCTCACAGTCCTGAACAGAGTGAAAGCCTTGGACACAGTGATGATGAATCATTTAAACTCTTGGATGAAGGGCCTGATTCTGACCACCATGCTCAAGGAAATTTATCATTGAATTGGCCAAGGGAAGCCAGGGCTAATGAGTTGGCAAGAAAGTTCATCTCCTGCAATCCATTTTTCACTGTTGTCATAAGATCTTATAATCTGACATCGTACAGGCTGAATATTCCGAATTTGGAGGGTTACATTGACAAGAGGAAGAAGTATGTTACAGTGGAAGTTGGAGGAGTATCATGGAGTTTGAGGTTGGTGGGTTCTGATCGTAGACGCCTCGGTGGTGGTTGGCGAGTGTTTGCAGAGGAGAATGATTTGGAAGCAGGAGATGTTTGTATCTTTGAACACATCTTCAGAAATGATTCTGATTTCAGAGTTCATATTTTCAAAAGCCAAAGATAA 795 0.4126 MAAHPPMDHAILPIRFFKTILKSNLQRLQIPKKFTNRYGENLSNPVFLRPPDGTQWKVYWSKQKGEIWFEKGWKQFVEHYSLDHGYFVFFTFDGTSEIDVLIVDQSSLDMQYPSSHSPEQSESLGHSDDESFKLLDEGPDSDHHAQGNLSLNWPREARANELARKFISCNPFFTVVIRSYNLTSYRLNIPNLEGYIDKRKKYVTVEVGGVSWSLRLVGSDRRRLGGGWRVFAEENDLEAGDVCIFEHIFRNDSDFRVHIFKSQR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0198 264 Gene3D - 13 107 IPR015300 -
Pvu7g0198 264 SMART B3_2 172 263 IPR003340 GO:0003677
Pvu7g0198 264 SMART B3_2 16 106 IPR003340 GO:0003677
Pvu7g0198 264 CDD B3_DNA 15 104 IPR003340 GO:0003677
Pvu7g0198 264 CDD B3_DNA 172 261 IPR003340 GO:0003677
Pvu7g0198 264 Gene3D - 154 263 IPR015300 -
Pvu7g0198 264 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 143 - -
Pvu7g0198 264 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 155 261 - -
Pvu7g0198 264 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
Pvu7g0198 264 PANTHER B3 DOMAIN-CONTAINING 155 261 - -
Pvu7g0198 264 PANTHER B3 DOMAIN-CONTAINING 13 143 - -
Pvu7g0198 264 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Pvu7g0198 264 SUPERFAMILY DNA-binding pseudobarrel domain 169 261 IPR015300 -
Pvu7g0198 264 Pfam B3 DNA binding domain 22 97 IPR003340 GO:0003677
Pvu7g0198 264 Pfam B3 DNA binding domain 172 262 IPR003340 GO:0003677
Pvu7g0198 264 ProSiteProfiles B3 DNA-binding domain profile. 172 263 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0198 Pvu-Chr7 1338178 1339622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0198 15 132 B3 DNA Binding Superfamily AT1G49475 33.333 1.15e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g0198 B3 2.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0198 - - ccaj:109795878 282.722