Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0197 AATGGTAGCTCTTTTCGTCAGTGTAAGAGAGTAAGATTTTCTGTACCATCTTCTCCTTCTACTAAGAAGGAGAAAATCCACCCAAGGAAGAACCCTAATAGCTATCCAACACAAGATGTTGAAACTAAATATGCTGAATCTGAAAGGACTACAGTTGATGAAAGAGGTAGAAGAAGAAACAGAAGATGTTCAAGATCCAAGGTTAAGACTGAAAGTGGCACTGCTTTAGAGAGAGCCAAGTCTTTCATCTCAGAGAATCCCTTCTTCATTCGTGTAATGCAACGATCACACATCATTAGGAAATTCCTGACTATGCCAGCTGATTTCATAACAGTTGAGGAACGAAAGGAAAATCATAGAGTTAGTGTTTGGATTTCTGAAGACAAAACTTGGGATATGAACGTTAATGTTTATAGAAGCAAGAAAGAAGTGTCACTAGGTTCTGGTTGGGCTAATTTTGTGAAGGACAATAACTTGAAAAAAGGAAATGTATGTGTGTTTGAGAAAATTAAGAATCCAGGACTTTCATTTAGAGTTGTCATTTACCGTGATGCACAAGAATCTAGTCCTTCCAACTTCTCAGCAAATGAAAGCAAAGAAACTAGGCCTCAAAAGAGTTCTGCTGACAGAGGCAGTGATGGAGTTCCAAAGAATGTTTTTTATGATTCAGGATTTCGTAGATACAACAATGAAATCTCAGAGAATCATTTTGCCCTCAGTGTGCTAAAGACTGTGTGCATACCAGAGCAATTCATCAGAAATCATATGATGCAGAATGCAGCTAAGGTTGGTCTGAGAGTAGGGAATAGAACATGGCCTGTGAAGCTAGAACATTATCCAGAGAATCAATGTCACAAATTATGTTATTCTGGTTGGTCCAAGTTCATGCGTGAATGCAAAGTGAATGTTGGTGATGTCTGTAATTTTGAACTGGTTGATAAGGACACGTTTGTTTTCCAAGTTAGAGTTGCAAGGTGCATAGATTGA 987 0.382 NGSSFRQCKRVRFSVPSSPSTKKEKIHPRKNPNSYPTQDVETKYAESERTTVDERGRRRNRRCSRSKVKTESGTALERAKSFISENPFFIRVMQRSHIIRKFLTMPADFITVEERKENHRVSVWISEDKTWDMNVNVYRSKKEVSLGSGWANFVKDNNLKKGNVCVFEKIKNPGLSFRVVIYRDAQESSPSNFSANESKETRPQKSSADRGSDGVPKNVFYDSGFRRYNNEISENHFALSVLKTVCIPEQFIRNHMMQNAAKVGLRVGNRTWPVKLEHYPENQCHKLCYSGWSKFMRECKVNVGDVCNFELVDKDTFVFQVRVARCID* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0197 328 MobiDBLite consensus disorder prediction 189 215 - -
Pvu7g0197 328 Gene3D - 212 328 IPR015300 -
Pvu7g0197 328 Gene3D - 68 186 IPR015300 -
Pvu7g0197 328 MobiDBLite consensus disorder prediction 42 59 - -
Pvu7g0197 328 SUPERFAMILY DNA-binding pseudobarrel domain 84 183 IPR015300 -
Pvu7g0197 328 SMART B3_2 237 325 IPR003340 GO:0003677
Pvu7g0197 328 SMART B3_2 89 185 IPR003340 GO:0003677
Pvu7g0197 328 SUPERFAMILY DNA-binding pseudobarrel domain 244 327 IPR015300 -
Pvu7g0197 328 PANTHER B3 DOMAIN-CONTAINING 19 184 - -
Pvu7g0197 328 PANTHER B3 DOMAIN-CONTAINING 233 325 - -
Pvu7g0197 328 MobiDBLite consensus disorder prediction 1 70 - -
Pvu7g0197 328 ProSiteProfiles B3 DNA-binding domain profile. 247 325 IPR003340 GO:0003677
Pvu7g0197 328 CDD B3_DNA 239 325 IPR003340 GO:0003677
Pvu7g0197 328 Pfam B3 DNA binding domain 89 183 IPR003340 GO:0003677
Pvu7g0197 328 Pfam B3 DNA binding domain 244 322 IPR003340 GO:0003677
Pvu7g0197 328 CDD B3_DNA 87 183 IPR003340 GO:0003677
Pvu7g0197 328 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 233 325 - -
Pvu7g0197 328 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 19 184 - -
Pvu7g0197 328 ProSiteProfiles B3 DNA-binding domain profile. 88 185 IPR003340 GO:0003677
Pvu7g0197 328 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0197 Pvu-Chr7 1335621 1337140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0197 75 192 REM Transcription Factor Family AT4G33280 33.058 5.08e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g0197 B3 7.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0197 - - pvu:PHAVU_007G019500g 650.973