Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0196 AGTTTTGTGAGTAAATATTGGGAAGATATGTCAAATCCACTGCTCCTTCTGCTTCCCAAAGGTGGTGAATGGAAAGTGAAATGGAAAAAAATTGGTGTTGACATTTGGTTGATTGAAAACTGGAAGAAATTTGTAGAGTTTTATTCTTTGGACCAAGATAATCTCTTGATCTTCAAATATGTGGGTGTGTCTCAGTTTGAGGTGGTGATACTTGATCAAAGTGGCTTGGAAATTTTTTACCCTTTGATGGAAGCAAAGTTAGATGATAATGGTACCTGTTCATGCAAGTTTAAGAAGGCAGAATCTTCTTTACCAGGTTCTCATTTCTCCAAGAAGGTGGAAGCCAACAACAGAAGAAACCAACCTGATATCACTCCAGATGTTGAGAATGTGAGAGCTGAATCTCAAAGATTTAAGGTTGATTTTCATGGTACACAAGTTGAAACAAGAGGTAGAAAAAGAAAAAGTTTTTCCTGTATGAAATCTTCAAACTCCAAGGAAAAAGCTATTCCAACTGAAAGTGGCACTGCTCTGGAGAGAGCCAAATCTTTCCAATCTCAGAATCGCTTCTTCGTTCGTGAAATGTTTCCATCATATATTCAAAGAAATATTATGGTGATGCCGGGTAATATTATTACAAAAGAAGAGGAGCATCACAGTGACAATGTTACTCTTTGGACATCTGAAGAAGACAGACATTGGCTTGTTCATTTTTATAGGAATAATTCCAGTCGTCAAATAAATCTTACTTCTGGTTGGAATCATTTTGCAAAAGATCATAACTTGAAAATAGGGGATGTTTGTGTTTTTGAGAAAATTGAGAAATCTGGAATTTCATTCAGAGTTCATATTTATAGAGTTGATATTTATAATGTGAAACAAGAACCAAGTTCTCCAAAGTTTTCAGATTGTGAAACTACTAAATGCAACAACATGACAGTAGAGAATCACTTCAGTGTCTGCATCAATGATAAGCAACTCTATTCTCTGAATGTTCCAAAGATTTTCTTCAAGAATCACGGTATTGCTAATGCAACTGAAGTGATCCTGCAACTTGGGGAGAGATCATGGAATGTGAAGCTAGACTCTTACAGTAGATTGACTGTGGGTTGGAATGATTTTATGAGAGAATGCAGATTGAAGGGTGGAGATGTTTGTGTGCTAGAGTTGATTGATAAGAAGAAGATTCTGTTTGAAGTTAGCATTCTAGCATTCATAGAGTGA 1224 0.3603 SFVSKYWEDMSNPLLLLLPKGGEWKVKWKKIGVDIWLIENWKKFVEFYSLDQDNLLIFKYVGVSQFEVVILDQSGLEIFYPLMEAKLDDNGTCSCKFKKAESSLPGSHFSKKVEANNRRNQPDITPDVENVRAESQRFKVDFHGTQVETRGRKRKSFSCMKSSNSKEKAIPTESGTALERAKSFQSQNRFFVREMFPSYIQRNIMVMPGNIITKEEEHHSDNVTLWTSEEDRHWLVHFYRNNSSRQINLTSGWNHFAKDHNLKIGDVCVFEKIEKSGISFRVHIYRVDIYNVKQEPSSPKFSDCETTKCNNMTVENHFSVCINDKQLYSLNVPKIFFKNHGIANATEVILQLGERSWNVKLDSYSRLTVGWNDFMRECRLKGGDVCVLELIDKKKILFEVSILAFIE* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0196 407 Gene3D - 302 406 IPR015300 -
Pvu7g0196 407 Gene3D - 170 290 IPR015300 -
Pvu7g0196 407 SMART B3_2 1 74 IPR003340 GO:0003677
Pvu7g0196 407 SMART B3_2 191 288 IPR003340 GO:0003677
Pvu7g0196 407 SMART B3_2 318 406 IPR003340 GO:0003677
Pvu7g0196 407 Gene3D - 1 75 IPR015300 -
Pvu7g0196 407 SUPERFAMILY DNA-binding pseudobarrel domain 184 287 IPR015300 -
Pvu7g0196 407 CDD B3_DNA 327 403 IPR003340 GO:0003677
Pvu7g0196 407 CDD B3_DNA 189 286 IPR003340 GO:0003677
Pvu7g0196 407 PANTHER B3 DOMAIN-CONTAINING 2 287 - -
Pvu7g0196 407 PANTHER B3 DOMAIN-CONTAINING 308 403 - -
Pvu7g0196 407 SUPERFAMILY DNA-binding pseudobarrel domain 2 80 IPR015300 -
Pvu7g0196 407 ProSiteProfiles B3 DNA-binding domain profile. 315 406 IPR003340 GO:0003677
Pvu7g0196 407 ProSiteProfiles B3 DNA-binding domain profile. 190 288 IPR003340 GO:0003677
Pvu7g0196 407 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 308 403 - -
Pvu7g0196 407 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 287 - -
Pvu7g0196 407 SUPERFAMILY DNA-binding pseudobarrel domain 327 401 IPR015300 -
Pvu7g0196 407 Pfam B3 DNA binding domain 329 395 IPR003340 GO:0003677
Pvu7g0196 407 Pfam B3 DNA binding domain 191 286 IPR003340 GO:0003677
Pvu7g0196 407 MobiDBLite consensus disorder prediction 153 174 - -
Pvu7g0196 407 ProSiteProfiles B3 DNA-binding domain profile. 1 74 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0196 Pvu-Chr7 1331839 1333602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0196 2 288 B3 DNA Binding Superfamily AT3G18990 26.866 2.29e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g0196 B3 6.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0196 - - pvu:PHAVU_007G019400g 839.336