Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0187 ATGGATTTCGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAATGCTGAAGTTAAGAAGGAGAAGCATAGGATTAATGGTAGTGACAGAAGTGTGAAGTCCGAAGAGAGAGGGCATGGTCGGAATTCTAAGCGCAAGAGTGATGAAAAAGATGATGACGACGTTGAATTCCATTCCAAGCATTCAAAGTCTGGAGATGATTCCCGCCATTATGAGAGGAAGAGAGAAAGAGGCTCCTCTCGTCATGGTTTGCCGTCCAGAGATGGAGAGAAGGAGAAAGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGGGAGAGAGACCATGAGAGCAATGATTTGAAGAGAGGTAGGGAGAGAGACAGAGATCGTGAGCGCGACCAAGAAAGGGATAGAAGGGACCGAGGAAGTGAGAGTGAACAGGAACACCGCAGTAAAAGTAGATCGGAAAAGCATCGGGGTGATCTGGATGACAGAGACAGAGAAACAGTTTTTGATAAAGACAGAGAAATAAGCCGGGATAAAGATTTCAGAGACAGAGAAAGGGTGAGGGAAACAAGGGAACGGGGTAGAGAAACCAGGCGACACAAAGAGAAAAAGGAAGAAGGAACAGAACCTGATGCTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCCTATCAGATTTCTCTTAAAGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTACGAGATGTTCGCTTGATTATGGACCGCAATTCAAGGCGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTCCTAGGTCAACCAGTGATGGTAAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGATCCACTGGACTTATCGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATTTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCACTTGATGAAAGTGGGCACTGTAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTCGATGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGAACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAGATTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGATTGTCCTTGAATGCATGTTCTCGAGCAATACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTGGGCAATTCTGTTGTCAGCAACACAGGTCTTAATCTACCAGCAACAGGAAACATACTCGCAGCTGTGCCCGAGGGTTCTCCCCATTCTTCTATTCCTGCAGTATCTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCCACAATTCCCTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAACATGTTTGATCCCAAAGACGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTAGAAGCAGAATGCTCCAAGTTTGGGACGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGTTTTGAAGAAACCCAATCTGCAATAAGTGCTCAGCGGTCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCGAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTCCTAGACAGCAGATAA 1812 0.4465 MDFDEYEYLEKTVENAEVKKEKHRINGSDRSVKSEERGHGRNSKRKSDEKDDDDVEFHSKHSKSGDDSRHYERKRERGSSRHGLPSRDGEKEKDQHRSSGGSRDRKRDRERDHESNDLKRGRERDRDRERDQERDRRDRGSESEQEHRSKSRSEKHRGDLDDRDRETVFDKDREISRDKDFRDRERVRETRERGRETRRHKEKKEEGTEPDADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQFARLDDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEIGGNTGDFDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSLGNSVVSNTGLNLPATGNILAAVPEGSPHSSIPAVSGLAGGGLQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEETQSAISAQRSLHGRWFAGKMITASFMVPQSYEDKFLDSR* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0187 603 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 414 527 IPR029123 -
Pvu7g0187 603 Gene3D - 154 305 IPR012677 -
Pvu7g0187 603 SUPERFAMILY RNA-binding domain, RBD 321 414 IPR035979 GO:0003676
Pvu7g0187 603 SUPERFAMILY RNA-binding domain, RBD 505 589 IPR035979 GO:0003676
Pvu7g0187 603 PANTHER CC1-LIKE SPLICING FACTOR 1 599 - -
Pvu7g0187 603 MobiDBLite consensus disorder prediction 16 168 - -
Pvu7g0187 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 533 585 IPR000504 GO:0003723
Pvu7g0187 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 394 IPR000504 GO:0003723
Pvu7g0187 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 288 IPR000504 GO:0003723
Pvu7g0187 603 TIGRFAM SF-CC1: splicing factor, CC1-like family 102 601 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pvu7g0187 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Pvu7g0187 603 CDD RRM1_RBM39_like 220 292 - -
Pvu7g0187 603 SMART rrm1_1 510 588 IPR000504 GO:0003723
Pvu7g0187 603 SMART rrm1_1 324 396 IPR000504 GO:0003723
Pvu7g0187 603 SMART rrm1_1 220 292 IPR000504 GO:0003723
Pvu7g0187 603 MobiDBLite consensus disorder prediction 182 217 - -
Pvu7g0187 603 Gene3D - 317 424 IPR012677 -
Pvu7g0187 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Pvu7g0187 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 592 IPR000504 GO:0003723
Pvu7g0187 603 Coils Coil 6 26 - -
Pvu7g0187 603 CDD RRM3_RBM39_like 508 590 - -
Pvu7g0187 603 Gene3D - 504 603 IPR012677 -
Pvu7g0187 603 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 599 - -
Pvu7g0187 603 SUPERFAMILY RNA-binding domain, RBD 211 313 IPR035979 GO:0003676
Pvu7g0187 603 SMART rrm2_1 324 396 IPR003954 GO:0003676
Pvu7g0187 603 SMART rrm2_1 510 588 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0187 Pvu-Chr7 1263215 1272623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0187 220 386 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 6.62e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0187 K13091 - gmx:100789839 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0187 7 1263215 1272623 Pvu7g0187 7 1263215 1272623 ECH