Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0160 ATGGAGAACGACACCACCGCCGCCGCCACCGCTAACAATAACACCGCCGCCGCTGCTAACAATAACACCGCCACCGCGAAAGTAGGTTCTGGAGGAGTGAAATCGAACAATCATAACCTAGAGGAGGAGCATTCCAATTTGAATGGCGAAGAGCACATGGCAGAGCAAGTGGAGGCGGAAGAGGAAGAAGATCGAGAAGCCGATGTAGGCGAAGGAGAACCAACTGGATCTGCACCCAATCCTCGCCAACCGTCGCGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTCCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGAAGGAAGTGATTATGGTAGTTGGGAAGGTGCAAGCTATTTGCACGATGGAGATGATTTTGATGATCTGCATGATGGTACTGATGTGGATGAGGATGATGACGAGGATGATGATGATGATGAAGATGATGATAATGATGAGTACGAGGATGAAGATGCATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTTTTTTCAAGCGACGAAGCATATGCAAGAGCATTACAGGAAGCTGAAGAGAGGGAGATGGCAGCTAGATTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGCGGAGGACATAGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGACGTTGATCCAGATGAACTTTCATACGAGGAGTTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGACACTATTGCCTGTTTGCCTTCACTCAACTACAAGATTGGGAGCGATCAGCATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTTTGAGGATGGTGAATCTTTAACACATCTTTCCTGCAAACATCTGTACCATCCTGAGTGTATCAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTCTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1044 0.4761 MENDTTAAATANNNTAAAANNNTATAKVGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADVGEGEPTGSAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEGASYLHDGDDFDDLHDGTDVDEDDDEDDDDDEDDDNDEYEDEDAFDVHAHASAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDIEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSLNYKIGSDQHGSNDSCVICRVDFEDGESLTHLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0160 347 MobiDBLite consensus disorder prediction 1 94 - -
Pvu7g0160 347 SUPERFAMILY RING/U-box 287 341 - -
Pvu7g0160 347 MobiDBLite consensus disorder prediction 136 167 - -
Pvu7g0160 347 CDD RING-H2_PA-TM-RING 296 336 - -
Pvu7g0160 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 343 IPR013083 -
Pvu7g0160 347 MobiDBLite consensus disorder prediction 142 167 - -
Pvu7g0160 347 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 35 345 - -
Pvu7g0160 347 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 35 345 IPR043312 -
Pvu7g0160 347 Coils Coil 40 60 - -
Pvu7g0160 347 Pfam Ring finger domain 294 336 IPR001841 -
Pvu7g0160 347 MobiDBLite consensus disorder prediction 37 54 - -
Pvu7g0160 347 MobiDBLite consensus disorder prediction 78 94 - -
Pvu7g0160 347 SMART ring_2 296 336 IPR001841 -
Pvu7g0160 347 MobiDBLite consensus disorder prediction 1 36 - -
Pvu7g0160 347 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Pvu7g0160 347 MobiDBLite consensus disorder prediction 55 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0160 Pvu-Chr7 1054281 1059575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0160 75 240 C3H Transcription Factor Family AT3G19910 50.595 1.65e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0160 K19045 - gmx:100306465 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0160 7 1054281 1059575 Pvu7g0160 7 1054281 1059575 ECH