Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0128 ATGGCATCTCAGACGAGGAAGAGAGTGGACGCCGTTGATTCTCGCTCTGCTTCCGTTCTTGTTCGTGCTAAAGATGGCAGTGCTTTTGCGCGATGCGACGATTGCAAGAAGAATGTGCCGGTTGTACTCATCGACATGCACAATTGCAGCCTTGAGGCGAAAATTAAAATGAACCTTGATGCGCAGGTTGTGGATCAGGCTGCTGAAGCTAAGAAGATAGAGAGGAAGAAACCGAAATCTAAAGAGCCGAAGGCGAAAAAGGCTAAGACAGAGAAGGGGAAGAAGGTCAAGGATCCTAACAAGCCTAAGCGTCCTGCAACGGCCTTCTTTGTCTTCTTGGATGATTTTAGGAAAACGTTCAAGGAAGCTAATCCTGACTCAAAGGATGTTAAAAGGGTTGGTAAGGAGGCCGGTGAGAAGTGGAAGTCTATGACTGACGAAGAGAAGAAACCTTATTTGGATAAAGTTGCTGAACTCAAGGCAGAATATGAGAAGGCCATGGAAAGCTATAGAGCCGGTGAAGTCGAAGAAGATCAAGCTGGATCTGATAAGGAAACTGCAGCAAAAGAAGTGGAAGAGGAGTTAACGGATGAAGAGTAG 600 0.4617 MASQTRKRVDAVDSRSASVLVRAKDGSAFARCDDCKKNVPVVLIDMHNCSLEAKIKMNLDAQVVDQAAEAKKIERKKPKSKEPKAKKAKTEKGKKVKDPNKPKRPATAFFVFLDDFRKTFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVAELKAEYEKAMESYRAGEVEEDQAGSDKETAAKEVEEELTDEE* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0128 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Pvu7g0128 199 SUPERFAMILY HMG-box 93 177 IPR036910 -
Pvu7g0128 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 193 - -
Pvu7g0128 199 Gene3D High mobility group box domain 85 187 IPR036910 -
Pvu7g0128 199 Coils Coil 56 76 - -
Pvu7g0128 199 Coils Coil 188 199 - -
Pvu7g0128 199 SMART hmgende2 101 172 IPR009071 -
Pvu7g0128 199 CDD HMGB-UBF_HMG-box 102 168 - -
Pvu7g0128 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Pvu7g0128 199 Coils Coil 156 176 - -
Pvu7g0128 199 MobiDBLite consensus disorder prediction 67 103 - -
Pvu7g0128 199 MobiDBLite consensus disorder prediction 170 191 - -
Pvu7g0128 199 MobiDBLite consensus disorder prediction 84 102 - -
Pvu7g0128 199 MobiDBLite consensus disorder prediction 170 199 - -
Pvu7g0128 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0128 Pvu-Chr7 878079 879792 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu7g0128 HMG_box 3.8e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0128 K25507 - gmx:100810345 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0128 7 878079 879792 Pvu7g0128 7 878079 879792 ECH