Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0121 ATGAATTGTTTTGTGGTTTGTCACTCCCCTTTGTGGGTAGTGACCATTGTGTTCTACACGTGCGTTTTCATCCCACTGATGCAACTCAAGAGAAGCATCATGGTCTTCTTCTCTTCTGAGACAAAAGGGGTGCCCACAGACATGGACTTCCCACAAACACCTTCTCTGCATGTGGGAAGGTACCAGGACTTAAAGGGCCATGAGGGTGATGGAGAAAGAGAAGAAAGTTGCTCCATTTGCTTGGTGGAGTATGAAGAAGAAGATGCAGTAAGCAAATTGGGAATGTGTGGGCATGTGTTTCATTTCAATTGCATTCATCAATGGATTCTTCGCAATCAATTTTCTTGTCCACTTTGTAGGTCTTTTTTGTTTTCTCATCATCATCATCATGTAGAAGCCCAGAATCAGATATAG 414 0.4275 MNCFVVCHSPLWVVTIVFYTCVFIPLMQLKRSIMVFFSSETKGVPTDMDFPQTPSLHVGRYQDLKGHEGDGEREESCSICLVEYEEEDAVSKLGMCGHVFHFNCIHQWILRNQFSCPLCRSFLFSHHHHHVEAQNQI* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0121 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 124 IPR013083 -
Pvu7g0121 137 Pfam Ring finger domain 76 120 IPR001841 -
Pvu7g0121 137 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 124 - -
Pvu7g0121 137 SUPERFAMILY RING/U-box 70 126 - -
Pvu7g0121 137 ProSiteProfiles Zinc finger RING-type profile. 77 120 IPR001841 -
Pvu7g0121 137 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 124 - -
Pvu7g0121 137 SMART ring_2 77 119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0121 Pvu-Chr7 836696 837109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0121 8 125 C3H Transcription Factor Family AT4G38140 41.667 1.64e-24 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0121 - - pvu:PHAVU_007G012000g 300.441