Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0111 ATGGTTCTATCAAACAGGAAACTGAAGCTTAAGCTCAGAGCTAAATTGCTCCAACAAGAAAATCATACCCACCTAGTTCCTTCATCTTCCAACTCTCTCAAAACCCTTTTGGACGCTGCCACCCACACACCCAGATTGTCCAAGCGAGACAAACTCCGAAAGCTTCGATCTTCCGAACACCCTCCAAAGGAACCCAACAAGGAAACTGAAACTGAACCAAAGGGTTCCGCCAATAAGAAAAGCAAGAAGAGAAAGAGGAAGGTAGAGGACGATGACGTGGCAAATGGGGCTCCCGATACCACACCACAGAACAACAGCACGAAGAAGAAGAAGAAGAAGAAGCTGAAGAAGAACAAGAAGAAAAAACCCAAAACCGCGGAAGAGAATGGTTCTAATGGTGCAGGGGAAACGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACAATGTTGATGTCCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAACTGGCAAGTTTAGAGGAATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGGGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAACAAAGCGAGCCAACAAAGCACCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGATTATATGTTGGGAATTTGAAATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAGTAATTGTGAGATAACGTCCATACGATTTGGTATGGATAAGGAGACGGGACAGTTTCGAGGGTATGCTCATGTGGATTTCAGTGATAGTCAGTCACTGAAAAGAGCACTTACATTGGACCAAATTGATTTGTCTGAGAGACCTGTCAGGATAAGTTGTGCAGTTCCTCTGAAGAAAAAACCAGGAACTCATAAAAGCTCCCCAGTTGATGGAGCTGATAATGGTGATAAATCAACTTCCTTAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGCAAGATGAAGAGGAGGACGTGCTATGAATGTGGTGAGAAAGGTCATGGTTTTTCGGATTGCCCTAAGAAACAAACAGGTGCTGCAACTACAACATAA 1218 0.4269 MVLSNRKLKLKLRAKLLQQENHTHLVPSSSNSLKTLLDAATHTPRLSKRDKLRKLRSSEHPPKEPNKETETEPKGSANKKSKKRKRKVEDDDVANGAPDTTPQNNSTKKKKKKKLKKNKKKKPKTAEENGSNGAGETPEATELTKTNTTTSQDNVDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKTKRANKAPDFAPEILEGYNRLYVGNLKWDITEEELRKFFSNCEITSIRFGMDKETGQFRGYAHVDFSDSQSLKRALTLDQIDLSERPVRISCAVPLKKKPGTHKSSPVDGADNGDKSTSLGSGKMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFSDCPKKQTGAATTT* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0111 405 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 57 400 - -
Pvu7g0111 405 Gene3D - 356 405 - -
Pvu7g0111 405 MobiDBLite consensus disorder prediction 379 393 - -
Pvu7g0111 405 SMART rrm1_1 255 326 IPR000504 GO:0003723
Pvu7g0111 405 SMART rrm1_1 160 232 IPR000504 GO:0003723
Pvu7g0111 405 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 57 400 - -
Pvu7g0111 405 CDD RRM1_PHIP1 161 232 IPR034361 -
Pvu7g0111 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 236 IPR000504 GO:0003723
Pvu7g0111 405 SUPERFAMILY RNA-binding domain, RBD 154 239 IPR035979 GO:0003676
Pvu7g0111 405 MobiDBLite consensus disorder prediction 329 405 - -
Pvu7g0111 405 MobiDBLite consensus disorder prediction 107 121 - -
Pvu7g0111 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 227 IPR000504 GO:0003723
Pvu7g0111 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 323 IPR000504 GO:0003723
Pvu7g0111 405 MobiDBLite consensus disorder prediction 346 376 - -
Pvu7g0111 405 ProSiteProfiles Zinc finger CCHC-type profile. 381 396 IPR001878 GO:0003676|GO:0008270
Pvu7g0111 405 CDD RRM2_PHIP1 255 326 IPR034362 -
Pvu7g0111 405 MobiDBLite consensus disorder prediction 40 154 - -
Pvu7g0111 405 SUPERFAMILY RNA-binding domain, RBD 247 338 IPR035979 GO:0003676
Pvu7g0111 405 Gene3D - 250 337 IPR012677 -
Pvu7g0111 405 MobiDBLite consensus disorder prediction 52 77 - -
Pvu7g0111 405 Gene3D - 97 232 IPR012677 -
Pvu7g0111 405 MobiDBLite consensus disorder prediction 130 154 - -
Pvu7g0111 405 SUPERFAMILY Retrovirus zinc finger-like domains 373 400 IPR036875 GO:0003676|GO:0008270
Pvu7g0111 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 330 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0111 161 310 Eukaryotic Initiation Factors Gene Family AT2G36660 32.704 1.49e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0111 - - gmx:100817668 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0111 7 765943 768127 Pvu7g0111 7 765943 768127 ECH