Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0062 ATGGCAGCAGAATCTGCAGTGGTTGGAGTGATTGATGGAAAATTTGAAAGTGGATACATAGTTAGAGTGAGAATGGGATCAGAGACACTGAAAGGAATAGTTTATGAAGTGGCAGAGGAGCATGAAAGTGTTCATAATCCACCACAGAGGAAGAGATCAGAGATGAAAAAGAGAGTTCCTGTTCATCCAAAACATAGCAGAAGTGGCTACAATTTCTTCTTTGCTGAACAACATGCAAAACTCAAGCCACTTCACCAAGGAAAAGAGGGAGAGATTCCTAGGATCATTGGTGAACTTTGGTCAAAGTTAAAACTATCCCAAAAGATGATTTATCAAGAGATGGCAATGAAGGATAAAGAAAGGTACATAGTAGAAATGGAGGATTATGTGGAGAAGCTGAAAATGGGTCCAATTATCACTGATGCTGTGCCACTTCGACAATGGCCTCCCAAACCAGACACAGAGATGTTGGATGTTGAAAGTGGAGAAGAAGGGTTTGAAGATAGAGGTTTTGGTGTGAAAGCAATGCCTCATGCAGTAATGGAGATTGAAACAAACTATTTGGGTTCAAAAGAAAATTCACCCAATTAG 591 0.401 MAAESAVVGVIDGKFESGYIVRVRMGSETLKGIVYEVAEEHESVHNPPQRKRSEMKKRVPVHPKHSRSGYNFFFAEQHAKLKPLHQGKEGEIPRIIGELWSKLKLSQKMIYQEMAMKDKERYIVEMEDYVEKLKMGPIITDAVPLRQWPPKPDTEMLDVESGEEGFEDRGFGVKAMPHAVMEIETNYLGSKENSPN* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0062 196 CDD HMGB-UBF_HMG-box 63 127 - -
Pvu7g0062 196 Pfam HMG (high mobility group) box 63 129 IPR009071 -
Pvu7g0062 196 Gene3D High mobility group box domain 47 138 IPR036910 -
Pvu7g0062 196 MobiDBLite consensus disorder prediction 41 64 - -
Pvu7g0062 196 SUPERFAMILY HMG-box 50 134 IPR036910 -
Pvu7g0062 196 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 63 130 IPR009071 -
Pvu7g0062 196 SMART hmgende2 62 131 IPR009071 -
Pvu7g0062 196 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 164 - -
Pvu7g0062 196 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0062 Pvu-Chr7 449944 451349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0062 3 160 ARID Transcription Factor Family AT1G04880 46.524 6.78e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu7g0062 HMG_box 1.7e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0062 - - vra:106770743 267.7