Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0061 ATGGCATCAACTTCTGGCGTTGGTAGCAGCTCAATACCCATCAAAGATGTAGCCACGAGCTTTCGTGCATATCCTCTTCCTCTAGCAAGATATGAGGAGATTGTAGAGAATTCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCATCTATGGGTACCAAGTACATGATTCCTATTGTTGGTGGAAGAGAACTAGATTTGCATCGTCTCTTCATTGAAGTGACTTCCCGAGGAGGGATTGCTAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCTTCAACAGCTACAAATGCTTCATTTGTGTTGAGAAAGTACTATGCTTCACTGCTCTACCATTATGAACAAATCTACTTTTTTAAAGCCCGGGAATGGGACCCTACTGCTCCTGATATTTTGCAGAACCAATCAACCCTGGTAGTTCCTCCTCCAAAAATTCAGTTTCCACAGTCTTTGTCAGAAATTCAACCCGGTGTTTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAACATCTTCGGCTGGGCCACCTCCAGTCATTGGGGTCATTGACGGGAAATTTGAAAGTGGTTATCTAGTTACTGTCACGATTGGCTCAGAGAAACTCAAGGGAGTACTTTATCAAGCTCCCCAGAATCCTGTATTGCACGCATCCGATCATAATAACAGCGCTTCTGCTTCAGCCGGTGTCCATCGGCGGCGACGCAGGAAGAAATCAGAGATAAAAAGAAGAGATCCTGCTCATCCAAAACCAAATAGAAGTGGGTACAATTTTTTCTTTGCTGAACAGCATGCAAGGTTAAAGGCACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAGGAGAAGGCCATGAAAGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATCGGGAGAAACTGAAGATGGGTCAAGTTATCAGTGATGCTGTGCCCCTTCAACAACGACTCCCTGATGGAGATGCTGACATGTTGGATGTTGACATGAAAACGGATGAAGCTGAGGGAGATTCCCTTCAAACTCCAGAGGAGAGTAGTTCTGGTGGAAGTGACTATGAAGATTATAATAAAACTGCAGAAAGAGGTTTTGATATGGATGCATTACCTGTATTAGGAATGGATGCAGAAACAAGCTATATGGGTTCAGAAGAGAAGTCATCCAAAGGGGGTTTATGA 1266 0.4273 MASTSGVGSSSIPIKDVATSFRAYPLPLARYEEIVENSQLFMFTLEKLHASMGTKYMIPIVGGRELDLHRLFIEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKAREWDPTAPDILQNQSTLVVPPPKIQFPQSLSEIQPGVFQQSNVNAAKLPEAMATSSAGPPPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLHASDHNNSASASAGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKALHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPDGDADMLDVDMKTDEAEGDSLQTPEESSSGGSDYEDYNKTAERGFDMDALPVLGMDAETSYMGSEEKSSKGGL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0061 421 SMART hmgende2 260 329 IPR009071 -
Pvu7g0061 421 SMART ARID_2 32 122 - -
Pvu7g0061 421 MobiDBLite consensus disorder prediction 361 399 - -
Pvu7g0061 421 SUPERFAMILY HMG-box 249 332 IPR036910 -
Pvu7g0061 421 MobiDBLite consensus disorder prediction 226 240 - -
Pvu7g0061 421 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Pvu7g0061 421 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 396 - -
Pvu7g0061 421 SUPERFAMILY ARID-like 34 134 IPR036431 GO:0003677
Pvu7g0061 421 Gene3D - 27 135 IPR036431 GO:0003677
Pvu7g0061 421 Coils Coil 310 330 - -
Pvu7g0061 421 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 396 - -
Pvu7g0061 421 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Pvu7g0061 421 Gene3D High mobility group box domain 245 339 IPR036910 -
Pvu7g0061 421 SMART bright_3 36 127 IPR001606 GO:0003677
Pvu7g0061 421 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Pvu7g0061 421 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Pvu7g0061 421 PRINTS High mobility group (HMG1/HMG2) protein signature 293 312 - -
Pvu7g0061 421 PRINTS High mobility group (HMG1/HMG2) protein signature 312 332 - -
Pvu7g0061 421 MobiDBLite consensus disorder prediction 226 268 - -
Pvu7g0061 421 CDD HMGB-UBF_HMG-box 261 325 - -
Pvu7g0061 421 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Pvu7g0061 421 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0061 Pvu-Chr7 442484 446805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0061 1 359 ARID Transcription Factor Family AT1G04880 59.043 5.01e-130 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu7g0061 ARID 7.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0061 - - gmx:100783284 724.161