Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0029 ATGAACAGAAACAAGGAAAGTTATTCAGATTGTTGTGGGGAAATCAATTCTGCAGCATTTGACGCCATGCAAGAGGAAAACAGAGCAGCAGGGTCGTTGTTTCAGAAGTTCAAAGGCGTGGTGCCGCAACAAAACGGGAACTGGGGTGCCCAGATATATGCAAACCACCACAGAATCTGGTTGGGGACATTCAAATCCGAAAGAGAAGCTGCAATGGCGTATGACAGCGCCAGCATAAAGCTCAGAAGCGGAGAGAGCCACAGAAACTTCCCATGGGACGATCAAACGGTGCAAGAGCCAGAGTTTCAGAGCCATTACAGCACAGAAGCAATGCTGAGCATGATCAGAGATGGCACCTACGCATCACACTTTGCCACGTTTCTCACCACTCGTAAAACCCAACAAGGCGTTGTTGCAAAGCACGTAACTTTGAAGGGTGATGAGGAGGAGAAGCTCTGCTGCACCCTGCTTTTTCAGAAGGAGCTGACACCAAGTGACGTGGGGAAGCTCAACAGGCTTGTGATCCCGAAAAAGCATGCAGTGAGCTATTTTCCTCCGGTGTGTGAGATTGCAGAAGGGCATGAAGAACATGGCAGTGTTGACGTTGAGGTTGCGTTCTATGACAGGTTGATGAGACTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGCCAGAGTTACGTGTTCACAAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTGAAGGCTAAAGATACCATTGCGTTTTTCATGTGTGAGCCTGTGGATTGGAGAAAAGGTGGAGAAGGAGAAGCTTTTGGATTGATTGATGTAATTTATAACTCAGATGATGAGAGAGGTTTGAAGTGTTTTGGAGAGTTGGTTTGCAGTGAGGAAGAAGAAGACACCAAAGAGGAAACCATTGAAAAGGATTTGAATGCACAAAAGGGTTTGAGACTCTTTGGTGTTTTCATCAAATAG 963 0.4611 MNRNKESYSDCCGEINSAAFDAMQEENRAAGSLFQKFKGVVPQQNGNWGAQIYANHHRIWLGTFKSEREAAMAYDSASIKLRSGESHRNFPWDDQTVQEPEFQSHYSTEAMLSMIRDGTYASHFATFLTTRKTQQGVVAKHVTLKGDEEEKLCCTLLFQKELTPSDVGKLNRLVIPKKHAVSYFPPVCEIAEGHEEHGSVDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDWRKGGEGEAFGLIDVIYNSDDERGLKCFGELVCSEEEEDTKEETIEKDLNAQKGLRLFGVFIK* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0029 320 SUPERFAMILY DNA-binding domain 36 92 IPR016177 GO:0003677
Pvu7g0029 320 Gene3D AP2/ERF domain 35 92 IPR036955 GO:0003700|GO:0006355
Pvu7g0029 320 SMART rav1_2 36 97 IPR001471 GO:0003700|GO:0006355
Pvu7g0029 320 Pfam B3 DNA binding domain 158 251 IPR003340 GO:0003677
Pvu7g0029 320 ProSiteProfiles B3 DNA-binding domain profile. 158 276 IPR003340 GO:0003677
Pvu7g0029 320 CDD B3_DNA 157 252 IPR003340 GO:0003677
Pvu7g0029 320 Pfam AP2 domain 36 82 IPR001471 GO:0003700|GO:0006355
Pvu7g0029 320 ProSiteProfiles AP2/ERF domain profile. 36 91 IPR001471 GO:0003700|GO:0006355
Pvu7g0029 320 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 300 IPR044800 GO:0003700
Pvu7g0029 320 Gene3D - 155 265 IPR015300 -
Pvu7g0029 320 SUPERFAMILY DNA-binding pseudobarrel domain 156 254 IPR015300 -
Pvu7g0029 320 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Pvu7g0029 320 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 19 300 - -
Pvu7g0029 320 SMART B3_2 158 262 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0029 Pvu-Chr7 201437 202399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0029 28 272 RAV Transcription Factor Family AT1G51120 59.690 1.44e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu7g0029 B3 4.5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0029 K09287 - gmx:102660503 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0029 7 201437 202399 Pvu7g0029 7 201437 202399 ECH