Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g0022 ATGAATGGGGACGTGGTTGAAAAAAAAGTGGCACGTGACCCAAATGGCACTGAGCCAATACAATTGCAGAATGCTGATGCAGCCTTAAAGTATTCCACAAGTGGCATACACCCACCAATGCCATCGCATCTATCTCTATCTAAATTGCTTATTGCACCTTCTTTTTCTAACCCAACCAAACCAAACCTTCTTCTTCTGCTTTCTTCTGCTTTCTCCTCCATGTATCCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCTCAATCCATGAGCCACGCGCCTACCGGCCTCACGCGCTACGGCTCCGCTCCCGGCTCTCTCCTCACCACCACCGTCGACGCCCTCATCGGAGGATCACGCCCCAACCCCACCCCTTACTATTCCGGAGGAGACTCTCCCGACTCCACCAGCAAGGACCAAACATCGTATCACAACCACGCCCTCGGATCCGCCTTACTCCGTCAAAAAAGCTCTCCCGCCGGCTTCCTCTCCCACCTCGCCGCCGCCACCACCAACCATAACCACAACCACACGCTCAATGGCGCGGGGTTCACCATCACGCGGGGCTCTCGGTTGAAGTCGCAGTTGAGCTTCACGGGTCACTGCCAAGAATCTCTGTGTGGCGGCGATAACAGTAACAATTTGGTGCTCGGCGACCATGCCGGCTTCGGAATGGAGCCGTGGGACGGTTCTCATTCTCATTCCAATTCCATCGCCTTTTCCACTCCCCCGCCGAAGCGCTCCAAAAACTCCAACTCCGCCGATCAAGACATTCTCCATTGCCTCAACGCCTTGGAGTCTCAGTTCAGTCTTCCTCAGACCACTCTCGAAATGGCGACGGTTGAGAAGCTCCTGCACATTCCTGAAGATTCCGTCCCTTGCAAAATCCGCGCTAAGCGAGGCTGCGCTACTCATCCCCGCAGCATTGCAGAGCGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTGCAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTTGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGAAGCTTCACAAAGAACTTGAGAATTGCAGTTGCGGATGCGCACAAAGCAAATAA 1125 0.5298 MNGDVVEKKVARDPNGTEPIQLQNADAALKYSTSGIHPPMPSHLSLSKLLIAPSFSNPTKPNLLLLLSSAFSSMYPSSSSSSSSSSSQSMSHAPTGLTRYGSAPGSLLTTTVDALIGGSRPNPTPYYSGGDSPDSTSKDQTSYHNHALGSALLRQKSSPAGFLSHLAAATTNHNHNHTLNGAGFTITRGSRLKSQLSFTGHCQESLCGGDNSNNLVLGDHAGFGMEPWDGSHSHSNSIAFSTPPPKRSKNSNSADQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELENCSCGCAQSK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g0022 374 MobiDBLite consensus disorder prediction 77 143 - -
Pvu7g0022 374 MobiDBLite consensus disorder prediction 1 20 - -
Pvu7g0022 374 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 96 366 - -
Pvu7g0022 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 352 IPR011598 GO:0046983
Pvu7g0022 374 MobiDBLite consensus disorder prediction 232 254 - -
Pvu7g0022 374 SMART finulus 308 358 IPR011598 GO:0046983
Pvu7g0022 374 MobiDBLite consensus disorder prediction 77 117 - -
Pvu7g0022 374 CDD bHLH_AtbHLH_like 307 359 IPR045239 -
Pvu7g0022 374 MobiDBLite consensus disorder prediction 125 143 - -
Pvu7g0022 374 PANTHER TRANSCRIPTION FACTOR BHLH129 96 366 - -
Pvu7g0022 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 369 IPR036638 GO:0046983
Pvu7g0022 374 Pfam Helix-loop-helix DNA-binding domain 307 353 IPR011598 GO:0046983
Pvu7g0022 374 Gene3D - 303 372 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g0022 Pvu-Chr7 136965 141398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g0022 152 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 54.701 1.22e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu7g0022 HLH 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g0022 - - vra:106771988 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0022 7 136965 141398 Pvu7g0022 7 136965 141398 ECH
Pvu1g1442 1 38622966 38625891 Pvu7g0022 7 136965 141398 ECH
Pvu7g2647 7 49524839 49528381 Pvu7g0022 7 136965 141398 ECH