Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2287 ATGAAGCGGAAGCAGACAAGGAAGGAGGCGGCGGAGAGGGAGCGGCGGGAGGAAGAGGACCGCCTCAACGATCCGGAAGAGCAGAGGCGGATTCAGCTGCTGGAGCAGGAGGAGGCAGACAGAATGCAGAGGGACACCATCCTCTTCCAGGAGAGGGAGAAGGCTTTCATGGATATCATAATCACTCGACAGCAGCAGGAGGAGGAGCAGCAGCAAGAGCAAGAGCGAGAGCATGAGCAAGAGCAGAGCATCGACCAGGACCATGAATTTGAATACGAAGATGGCCCTCCTGAGATTATTTGGCAAGGAAACGAGATCATCTTCAAGAAGAAACAACTCAGAGTGAGGGTTACGGACACGCACCATGACCACAATAGACCTACATCCAATCCCTTACCTCCGGAATCATCCGTATCGGAATCGGAATCGGAATCGCGCACTCAGACCCTTCAGGATGTTGCTCAGCAAATACCCAATTTCGGAACTGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACTGGAGCATGTCGTTTTGGTATGCGGTGTAGCAGAGTCCATTTTTACCCTGATAAATCATCCACTATTCTTATCAAAAACATGTACAACGGACCTGGCCTTGCTTGCGATCGGGACCAAGACGAGGGCCTCGAGTATACAGATGAAGAGGTTGAACGTTGCTTTGAAGAATTTTACGAGGATGTCCACACAGAATTCTTGAAGTTTGGGGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTACAGTACAAAGCATTGGATTCTGCTCTGCTTGCTTATAACTTGGTGAACGGTCGCTACTTTGCTGGAAAACAGGTAACTTGTCAATTTGTTAACTTGACAAGATGGAAGGTAGCCATATGTGGCGAGTATATGAAATCAGGTTTCAAGACTTGTTCTCACGGAACAGCATGCAATTTTATTCACTGTTTTCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCTCCCCCAAAATTTTGGGTTGAAAAGATTATTGCTTTATTTGGTTATTCTGATTATTACGAGACTTCAAGGGAGCAAGGAAATTTGAGTTTGTCAAAAACAGATTCTGACAGGTATCACTGTACAAGGTCAAGATCTAGGGAGATGGATAAGATAAGTTGTGGTCATTCTGGTAGAAGAAAACATGAAGATGAAAGAAAGCAAAGAACTCCCAATGAGGATCGGAATGCTAGCTTTAAAAACACTCATAAAAGAAAATCCCTAGGCAGAACCCCTGATACTGATTCTGACAGAGAATGGTTAGAAAAGGAGGAAAATAGGGAAAGACGCCATGAGTACACTAGGAATGGGTCGTTTAACAAGAACAGGGATGACAATAGCGGAAGCCATGAAGAGGATTCTGATGTGGATTGTGATACTAGGGACAATGAAAAACAGCATGGTAGAGATGTGAGAAGGCACCGTATTAGCGAAAGCTCAAGACATCAGGGTGGTGATGCTTCTGAATCCGACAAAGATTTGTTTGGTAGAGTGGCCATGGAAACAGTACATGATTATTCTAGGAAAAGCTCCAGACACAGAAGATCGGATGTGTATAAAAAGAAGAGATCAAAATGA 1644 0.4428 MKRKQTRKEAAERERREEEDRLNDPEEQRRIQLLEQEEADRMQRDTILFQEREKAFMDIIITRQQQEEEQQQEQEREHEQEQSIDQDHEFEYEDGPPEIIWQGNEIIFKKKQLRVRVTDTHHDHNRPTSNPLPPESSVSESESESRTQTLQDVAQQIPNFGTEQDKAHCPFHLKTGACRFGMRCSRVHFYPDKSSTILIKNMYNGPGLACDRDQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKALDSALLAYNLVNGRYFAGKQVTCQFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVEKIIALFGYSDYYETSREQGNLSLSKTDSDRYHCTRSRSREMDKISCGHSGRRKHEDERKQRTPNEDRNASFKNTHKRKSLGRTPDTDSDREWLEKEENRERRHEYTRNGSFNKNRDDNSGSHEEDSDVDCDTRDNEKQHGRDVRRHRISESSRHQGGDASESDKDLFGRVAMETVHDYSRKSSRHRRSDVYKKKRSK* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2287 547 MobiDBLite consensus disorder prediction 372 547 - -
Pvu6g2287 547 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Pvu6g2287 547 MobiDBLite consensus disorder prediction 68 89 - -
Pvu6g2287 547 MobiDBLite consensus disorder prediction 118 150 - -
Pvu6g2287 547 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 1 540 - -
Pvu6g2287 547 MobiDBLite consensus disorder prediction 59 89 - -
Pvu6g2287 547 MobiDBLite consensus disorder prediction 378 534 - -
Pvu6g2287 547 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 168 188 IPR000571 GO:0046872
Pvu6g2287 547 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 327 IPR000571 GO:0046872
Pvu6g2287 547 Coils Coil 61 84 - -
Pvu6g2287 547 SMART rrm2_1 212 293 IPR003954 GO:0003676
Pvu6g2287 547 PRINTS U2 auxiliary factor small subunit signature 169 188 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu6g2287 547 PRINTS U2 auxiliary factor small subunit signature 188 208 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu6g2287 547 PRINTS U2 auxiliary factor small subunit signature 226 241 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu6g2287 547 PRINTS U2 auxiliary factor small subunit signature 254 276 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu6g2287 547 PRINTS U2 auxiliary factor small subunit signature 281 305 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu6g2287 547 PRINTS U2 auxiliary factor small subunit signature 319 331 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu6g2287 547 SMART c3hfinal6 164 190 IPR000571 GO:0046872
Pvu6g2287 547 SMART c3hfinal6 299 328 IPR000571 GO:0046872
Pvu6g2287 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 297 IPR000504 GO:0003723
Pvu6g2287 547 Coils Coil 1 28 - -
Pvu6g2287 547 Gene3D - 194 295 IPR012677 -
Pvu6g2287 547 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 540 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu6g2287 547 SUPERFAMILY RNA-binding domain, RBD 229 297 IPR035979 GO:0003676
Pvu6g2287 547 MobiDBLite consensus disorder prediction 7 29 - -
Pvu6g2287 547 CDD RRM_U2AFBPL 196 296 - -
Pvu6g2287 547 ProSiteProfiles Zinc finger C3H1-type profile. 299 329 IPR000571 GO:0046872
Pvu6g2287 547 MobiDBLite consensus disorder prediction 129 150 - -
Pvu6g2287 547 MobiDBLite consensus disorder prediction 1 29 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu6g2287 zf-CCCH 1.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2287 K24273 - gmx:100789091 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2287 6 31916147 31924712 Pvu6g2287 6 31916147 31924712 ECH