Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2283 ATGATGTCTGAAGATGCTGGATCTATGTTGGTAGTTTATGATGATGTCTCCGACCAACGCTCTCTGTCTTTGGATGATGCAAGCAGCGCCGAGGAGTCACCTGATGAAACCAGGCTCTCCTTGGAATCAACACATGATGCTATTCCGTACATTGGTCAGAGGTTTGCCACTCATGATGCTGCTTACGAGTTCTATAGTGAATTTGCCAAAAGGAGTGGCTTTTCGATTAGACGTCACCGCACAGAAGGAAAAGATGGTGTTGGAAAAGGGCTCACCAGGCGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAAACATCAACTGAAAGTAAACCTCAGAGAAATAGAAAGTCTTCTCGCTGTGGGTGTCAGGCGTACATGCGGATTAGCAAAACAACGGAATTTGGAGCTCCCGAATGGCGTGTCACTGGTTTTGCTAACCACCATAATCATGAACTTCTGGAACCAAACCAAGTTCGGTTTCTCCCTGCATACAGAACTATCTCGGATGCTGACAAAAATCGAATACTGATGTTTGCCAAAACAGGAATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAAGACGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTGGATTTATTGAGAATGTGCAGAAATATTAAGGAGAAAGACCCTAATTTTAAATTTGAGTACACACTTGATGCAAACAACCGTTTGGAGAATATTGCTTGGTCATATGCTTCATCAATCCAGTGGTTTGAAATATTTGGTGACGCTGTGGTGTTTGATACAACACACCGCCTAACTGCTTTTGACATGCCGCTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGCACACTTTTACGGGATGAAACCGTGAGGTCGTTTTCCTGGGCACTGAAGGCTTTCTTAGGGTTCATGAATGGGAAGGCTCCACAGACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATGCACAGAAATGCCTACAACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCCTGGTTTAATGCTGTTCTGGGGGAACGGTACAATGAGTGGAAGGCTGAATTCTACAGGCTTTATAATCTTGAGTCAGTTGAGGATTTTGAACTAGGTTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTCAATTTATATAGTTCACGCTCTCTTTGGGCGTTGCCATTTCTGAGAAGCCATTTTCTTGCTGGAATGACTTCAACTGGTCAGTCAAAGTCAATCAATGCTTTCATTCAACGATTTCTAAGTGCACAAACTCGCCTTGCACACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGGGCCCCTATGGAATCACACGCAGCCACTATCCTCACTCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGCTGGCTGCACATTATGCATCGTTTTCAATTGAAGATGGTTTTCTTGTGAGGCACCACACCAAAGCCGAGGGAGGTCGGAAAGTTTATTGGGGCCCTCAAGAGGGAATTATAAGTTGTAGCTGCCATCAGTTTGAGTTCACTGGTATTCTTTGCCGGCATTCCCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCAGATAGATATCTTCCTATTCGATGGCGTCGTATAAGCATGCCCTCTACTAAGCTTCTTCAAAGTCCACCAAACGAGCATGCTGAAAGAGTCAAGTTATTACAAAACATGGTTTCATCTCTGATGACAGAATCTGCTAAATCTAAGGAACGGTTAGATATTGCAACAGAACAAGTTTCCATCCTTCTGTCTCGCATAAGAGAGCAACCAATTTCTTTACAAGGTGGCCGAGATATTTCTTCCATTAATAGGAATCTTTGA 2043 0.4254 MMSEDAGSMLVVYDDVSDQRSLSLDDASSAEESPDETRLSLESTHDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDANNRLENIAWSYASSIQWFEIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCTLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALCTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTSTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWGPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISMPSTKLLQSPPNEHAERVKLLQNMVSSLMTESAKSKERLDIATEQVSILLSRIREQPISLQGGRDISSINRNL* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2283 680 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Pvu6g2283 680 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 19 674 - -
Pvu6g2283 680 SMART 26again6 565 592 IPR006564 GO:0008270
Pvu6g2283 680 MobiDBLite consensus disorder prediction 102 121 - -
Pvu6g2283 680 Pfam MULE transposase domain 279 371 IPR018289 -
Pvu6g2283 680 Pfam SWIM zinc finger 556 588 IPR007527 GO:0008270
Pvu6g2283 680 Pfam FAR1 DNA-binding domain 63 156 IPR004330 -
Pvu6g2283 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 674 IPR031052 GO:0006355
Pvu6g2283 680 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2283 Pvu-Chr6 31894177 31897669 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu6g2283 MULE 2.9e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2283 - - pvu:PHAVU_006G220900g 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2283 6 31894177 31897669 Pvu6g2283 6 31894177 31897669 ECH