Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2282 ATGTGTGCCATCCGCCAATGGGTTTGGCCTAAACCCTGTAAATGGGTGAAGGGAAAACTGATTGGATGTGGATCTTTCGGCACTGTTCATTTGGCGATGAACAAATCCACGGGTTCCCTTTTTGTAGTAAAATCATCAAATTCCAGGGCTGGACGTGAGGCTTTGGATGAAGAGGTCAAGATTCTGAACACATTGAATTCTGAACACATTGTCCAGTATTTAGGGGCAGAGGAGGAGCAGGGCAAACTGAACGTTTTCATGGAGTATATGGCAGGAGGTAGTTTGGCAGACGTGGCTCTCAAGTTCGGTGGGTCATTGGATGAAGAGGTGGTTCGGGTGTATACCAGGGAAATTCTTCACGGGCTAAACTATCTTCACCTTCATGGAATTGCACACTGCGATCTCAAGTGCAAGAACGTGCTTTTGGGTCCACCTGGGAATGTCAAGTTGGCTGATTTTGGATGTGCCAGAAGGGTTAAGGACTTGGTAAAGTCCAGTGGTGGGACCCCTCTTTGGATGGCTCCTGAAGTGCTGAGGAACGAGTCTGTGGATTTGTCTGCAGATATATGGTCCTTGGGATGCACAGTTATTGAGATGGCTACTGGCACGCCTCCTTGGGCTCATGAGGTTTCAAATCACATTGGTGCTGTGCTCAGGATTGCTCATGGTGATGGTATACCTCAGTTTCCACCTCATTTCTCCAAGGAGGGTTTGGATTTCTTGAGCATGTGCTTGCAGAGAGACCCCAGTAAGAGACCTACGGCTGAGCAGTTACTTTCTCATCCCTTTGTTACCTCAACACCTTCTCAACAGCAGCCTGCTTTCTCACCCGCAAGCGTCTTGGAGGTTCACAATTTCAAAGACTCTTGTGACATAGGTGAATTAGAAAGTTCAGTGGGGGATGATTTCTCATTCACAGACAGATTTGCATCTCACAGTGATTACTCCAACGGAACACCAGTATGTAAAGCGGAAGACAGTGCTTTGGGCTCTTCAGGGAATTGGATTACAGTTAGATCAGGCTGA 1026 0.4737 MCAIRQWVWPKPCKWVKGKLIGCGSFGTVHLAMNKSTGSLFVVKSSNSRAGREALDEEVKILNTLNSEHIVQYLGAEEEQGKLNVFMEYMAGGSLADVALKFGGSLDEEVVRVYTREILHGLNYLHLHGIAHCDLKCKNVLLGPPGNVKLADFGCARRVKDLVKSSGGTPLWMAPEVLRNESVDLSADIWSLGCTVIEMATGTPPWAHEVSNHIGAVLRIAHGDGIPQFPPHFSKEGLDFLSMCLQRDPSKRPTAEQLLSHPFVTSTPSQQQPAFSPASVLEVHNFKDSCDIGELESSVGDDFSFTDRFASHSDYSNGTPVCKAEDSALGSSGNWITVRSG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2282 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Pvu6g2282 341 ProSiteProfiles Protein kinase domain profile. 15 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2282 341 SUPERFAMILY Protein kinase-like (PK-like) 10 277 IPR011009 -
Pvu6g2282 341 SMART serkin_6 15 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2282 341 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 7 340 - -
Pvu6g2282 341 Gene3D Transferase(Phosphotransferase) domain 1 13 307 - -
Pvu6g2282 341 CDD STKc_MAPKKK 14 264 - -
Pvu6g2282 341 Pfam Protein kinase domain 16 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2282 341 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 340 - -
Pvu6g2282 341 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2282 Pvu-Chr6 31892280 31893895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2282 14 299 MAP Kinase Kinase Kinase AT3G06030 40.923 1.56e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pvu6g2282 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2282 - K20716 vra:106775623 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2282 6 31892280 31893895 Pvu6g2282 6 31892280 31893895 ECH