Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2281 ATGGGAAGGAAAAAGGCAGAGGATGCTGGGCCATCTGCGAAGACCAAGGCAAGTAAAGATGCTCCCAAGAAGGAAAAAATTTCTGTCTCTGCCATGCTGGCCAGCATGGATGAAAAGCCTGATAAACCCAAAAAAGTCTCTTCTACCTCTAGTAAGCCAAAGCCAAAATCTGCTCCAAAAGCTTCTGCATACACTGATGGTATTGATCTTCCTCCGTCTGATGATGAAGATGATGATCTCCTAGAACAGGAGGAGCAAAATTCCAAACGGGGAAGTCAGCAGCAAAAGCCTGATTTGAAGCCTCTTGATGTGCCTATTGCTGAGAAAGAGTTGAAAAAGCGTGAAAAGAAGGATATTTTAGCAGCCCATGCTGCTGAGCAGGCAAAGAAGGAGGCTCTTAGGGACGATCGTGATGCATTCACTGTGGTGATTGGAAGCCGAGCTTCGGTGCTTGATGGAGATGATGATGCTGATGCTAATGTGAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGTGGTAAAGAACTTCTGAAGAATGCATCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGCAAGTCCACACTGCTGAAACTTCTTGCCTGGAGGAAGATACCAGTACCCAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGACAAGACAGCCCTTGAAGCTGTTGTTTCAGCTAATGAAGAACTAGTTAAAATTCGACAAGAGGTTGCCTCTCTTCAGAATGCAGTTTCTGCTGAAGAAAGTGTAGACAAAGACGATGATGATGAAGATGATACGGGAGAAAAGCTAGCAGAGCTATATGAAAAACTGCAGTTGATGGGATCTGATGCTGCCGAAGCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACGAAGAATATGCAAGGCCGTCCTACAAAATCCTTTAGTGGAGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCCCTTTTTGTTCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTCGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTTTGGTAGTTGTCTCACATGATAGAGATTTTCTCAATACAGTATGTACTGAGATTGTTCATCTCCATGATTTGAAACTTCACTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGATATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAGTTGAAAGCAGCTAAAAGGAGTGGAAACCGCGCCCAGCAAGAAAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAACCAAAGGCAAGGGCAAGGTTGATGAGGATGATGCCCCATCAGAGGTTCCTCAGAAGTGGAGGGATTACAGTGTGGAATTCCACTTCCCTGAACCCACTGAGCTTACACCCCCACTTCTGCAGCTCATCGAAGTCAGCTTTAGCTACCCAAACAGAGAGGATTTCAGGCTATCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCCACGTTGTTGAATCTTCTAGCTGGTGATTTAGTTGCTTCTGAGGGTGAAGTCCGAAGAAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTCAGCAAGCAGGAGGCTGTTCGTGCAAAACTTGGTAAGTTTGGGCTACCGAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAATCTCGGGTTGTCTTCACATCTATTTCCATGTCAAAGCCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCAGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTCGTCAGTCATGATTCAAGATTGATATCACGTGTGTGTGATGATGAAGAAAGGAGTCAAATTTGGGTTGTCGAGGATGGTACTGTCAGAACTTTCCCTGGAACATTTGAGGATTACAAGGATGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA 2172 0.4392 MGRKKAEDAGPSAKTKASKDAPKKEKISVSAMLASMDEKPDKPKKVSSTSSKPKPKSAPKASAYTDGIDLPPSDDEDDDLLEQEEQNSKRGSQQQKPDLKPLDVPIAEKELKKREKKDILAAHAAEQAKKEALRDDRDAFTVVIGSRASVLDGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKIRQEVASLQNAVSAEESVDKDDDDEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKNMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIVHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKTKGKGKVDEDDAPSEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVASEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTVRTFPGTFEDYKDDLLREIKAEVDD* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2281 723 Pfam ABC transporter 513 648 IPR003439 GO:0005524
Pvu6g2281 723 Pfam ABC transporter 179 349 IPR003439 GO:0005524
Pvu6g2281 723 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 723 - -
Pvu6g2281 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 401 IPR027417 -
Pvu6g2281 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 496 721 IPR003439 GO:0005524
Pvu6g2281 723 Gene3D - 461 722 IPR027417 -
Pvu6g2281 723 CDD ABCF_EF-3 164 394 - -
Pvu6g2281 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 710 IPR027417 -
Pvu6g2281 723 PANTHER - 5 723 - -
Pvu6g2281 723 Gene3D - 161 446 IPR027417 -
Pvu6g2281 723 Coils Coil 240 260 - -
Pvu6g2281 723 MobiDBLite consensus disorder prediction 431 471 - -
Pvu6g2281 723 MobiDBLite consensus disorder prediction 1 110 - -
Pvu6g2281 723 Coils Coil 413 433 - -
Pvu6g2281 723 SMART AAA_5 188 393 IPR003593 -
Pvu6g2281 723 SMART AAA_5 522 698 IPR003593 -
Pvu6g2281 723 MobiDBLite consensus disorder prediction 1 26 - -
Pvu6g2281 723 CDD ABCF_EF-3 496 698 - -
Pvu6g2281 723 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 164 424 IPR003439 GO:0005524
Pvu6g2281 723 ProSitePatterns ABC transporters family signature. 321 335 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2281 Pvu-Chr6 31886057 31889397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2281 496 699 Calmodulin-binding Proteins AT2G36910 28.378 6.12e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2281 K06184 - gmx:100806865 1211.44