Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2279 ATGGGTTGTATATGCTCCAAAGCACATTCATCAGACCAATTCGTTTCTCAAAACCATTCCCAAGATTTGAAGGTCACTTCATCCTCCAACACCAACCATTTCGGAGACACCACTTCCCTCATATCCAATGCAAATCACCATTCAAATTCAAATTCAAATTCAAGCGAAGAAAAAGCCTCCACCCCAATTTTGTCGGATCAGCTTCAACATAAAGGGGAGCAGAATGGCAATGGGAATGGGGTGCGATCAACCAAACATACACAACAACAACAACAACCTAAGATGTGTAGGTTGTATAGTATAACCAGGGGGGAAAGAGGAGTTCAGGTTCTTGCTGGGTGGCCCTCTTGGCTCTCTGCTGTTGCTGGTGAAGCCATTAGTGGCTGGATACCTCGTAGGGCTGATTCCTTTGAGAAGTTGGATAAGGCAATTCCTATTATTTTCTCTTTCCATTCTTATTTAGTGTCATCAACCGTAACAAACTTTCCTGTCTTTTTCCAGATTGGCCAAGGAACTTACAGCAGTGTTTATAAAGCTCGTGATCTCGAAACCAATAAAATTGCTGCATTGAAGAAGGTTCGATTTACTAATATGGATCCAGAAAGTGTTCGTTTTATGTCAAGGGAAATTATTGTGCTGCGAAGGCTTGATCATCCCAATGTCATGAAGCTTGAGGGCATGATTGCCTCACGGGTCTCTGGTAGCTTGTACCTTATCTTTGAATATATGGACCATGATCTTGCAGGACTTGCAGCAATACCTGACAACAAGTTTACCGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTCGTACATCGTGACCTAAAAGGCTCAAATCTTCTCGTTGACAGTAATGGCAAACTGAAGATTGGTGATTTTGGGCTAGCAACTTTGCTTCAGCCATCTCAGGGGCAGCCTTTAACAAGTCGGGTAGTAACCTTGTGGTACAGGCCACCTGAACTTCTTCTTGGAGCTACAGATTATGGAGTTACTGTGGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTTGGGAAGCCTATACTGTCTGGACGAACAGAGGTGGAGCAACTGCATAAAATCTTCAAACTTTGTGGATCTCCCTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATTCAACAATTTTTAAACCTCAACAACCTTACAAACGCATTGTTTCTCAAACATTCAAGGATTTTCCTTCATCTACCCTGAGCCTCATGGAGGTCCTTCTAGCTGTTGAATCGAATGATAGAGGAACTGCATCTTCAGCACTTCGACATGAGTTCTTCACAACAATGCCACTTCCTTGTGATCCATCATCTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGATGCGAAACTTCGCGAAGAGGAAGCTAGAAGACGAAGAGCACCAAATAAAGGACATGAACCTGAATCAGTTGGGAGTAATTTTAGAGAGTCTAAAGATGTGGCAATACCTGATGCGAATGCTGATTTTCAGGCAAGCATGGGACAAGGACGCTGTATTTCTAAGCGCGTCACTGAGAAGTACAATTACGAAAAGGATGACGGTTATGGCTTCTCTCGTGAACCTGTAAAGTCAAGAACACTCAATGTATTTCCTCATTCTGGCCAGTCAATGCATCCAAGTGTTTATGGGTCCTCAAACAATATGAATTTGAACGAGGAAAATGTTCGCACCTTCCATGATCATGGCTCTATATCAGGAAAGTCTGAGTTGAGAAAACATACTTCCTATTGGCAAGGTAGCCCTGCAAAATTGTCAAGATTTTCTAATTCAATTGCGGTTCGAGGTGATTCACTGCTTGATATGAGTGGTGACTTTAGTGTGAATTCGCAGTTGCCAGAAGATCAATTTGGCATGAGATATAAGCATGAAGCTGATGGTGAGTCCAACCAATTGTTGGATAGACTCAAATCTTCAGAGATGGACTTTCTCCCCATGGGGAAGGATCGTGCCAAGGGCTTTGCTAACAAAAATGCCCGCATGCATCATTCTGGACCGTTGCTGGCTCGAGGGGATAATCTTGAAGAAATGCTGAAGGCACACGAAAGGCAAATCCAAAATGCTGTCCGGAAAGCTCGTTTGGGTAAGGATGAAACAAAGAACTGA 2166 0.4321 MGCICSKAHSSDQFVSQNHSQDLKVTSSSNTNHFGDTTSLISNANHHSNSNSNSSEEKASTPILSDQLQHKGEQNGNGNGVRSTKHTQQQQQPKMCRLYSITRGERGVQVLAGWPSWLSAVAGEAISGWIPRRADSFEKLDKAIPIIFSFHSYLVSSTVTNFPVFFQIGQGTYSSVYKARDLETNKIAALKKVRFTNMDPESVRFMSREIIVLRRLDHPNVMKLEGMIASRVSGSLYLIFEYMDHDLAGLAAIPDNKFTEAQIKCYMQQLLRGLEHCHSRGVVHRDLKGSNLLVDSNGKLKIGDFGLATLLQPSQGQPLTSRVVTLWYRPPELLLGATDYGVTVDLWSAGCILAELFVGKPILSGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHSTIFKPQQPYKRIVSQTFKDFPSSTLSLMEVLLAVESNDRGTASSALRHEFFTTMPLPCDPSSLPKYPPSKEFDAKLREEEARRRRAPNKGHEPESVGSNFRESKDVAIPDANADFQASMGQGRCISKRVTEKYNYEKDDGYGFSREPVKSRTLNVFPHSGQSMHPSVYGSSNNMNLNEENVRTFHDHGSISGKSELRKHTSYWQGSPAKLSRFSNSIAVRGDSLLDMSGDFSVNSQLPEDQFGMRYKHEADGESNQLLDRLKSSEMDFLPMGKDRAKGFANKNARMHHSGPLLARGDNLEEMLKAHERQIQNAVRKARLGKDETKN* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2279 721 Gene3D Transferase(Phosphotransferase) domain 1 245 485 - -
Pvu6g2279 721 SUPERFAMILY Protein kinase-like (PK-like) 158 454 IPR011009 -
Pvu6g2279 721 Coils Coil 691 718 - -
Pvu6g2279 721 CDD STKc_CDK9_like 162 446 - -
Pvu6g2279 721 Pfam Protein kinase domain 167 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2279 721 Gene3D Phosphorylase Kinase; domain 1 151 244 - -
Pvu6g2279 721 SMART serkin_6 162 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2279 721 ProSitePatterns Protein kinases ATP-binding region signature. 168 191 IPR017441 GO:0005524
Pvu6g2279 721 MobiDBLite consensus disorder prediction 469 498 - -
Pvu6g2279 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Pvu6g2279 721 MobiDBLite consensus disorder prediction 469 494 - -
Pvu6g2279 721 PANTHER KINASE CDK9, PUTATIVE-RELATED 89 142 - -
Pvu6g2279 721 PANTHER KINASE CDK9, PUTATIVE-RELATED 162 714 - -
Pvu6g2279 721 ProSiteProfiles Protein kinase domain profile. 162 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2279 721 MobiDBLite consensus disorder prediction 19 93 - -
Pvu6g2279 721 PANTHER CELL DIVISION PROTEIN KINASE 89 142 - -
Pvu6g2279 721 PANTHER CELL DIVISION PROTEIN KINASE 162 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2279 Pvu-Chr6 31877320 31882291 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2279 156 478 Core Cell Cycle Gene Families AT5G10270 48.521 1.54e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu6g2279 Pkinase 5.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2279 - - gmx:100805055 1022.31