Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2271 ATGGCCTCCGCTAGCCTCGGAAGTGGTGGCGTCGGCAGTTCCAGGTCTGTTAACGCCGCCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCCGAGAGATGCTCGAGATGAGATTGAGAGACCACGACGACGATAGAGATAGTGAGCCTGACATCATTGACGGTGTGGGTGCTGAGACTGGGCACGTGATAAGAACTAGTATTGGTGGCAGAAATGGTCAATCTAAGCAGAATGTGAGTTATATTGCAGAACATGTGGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAGGCCAAATGCAGAGAAACAGGAGAGATTGTGGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGGGAGTTACAGATTATGCAAATGCTGGATCACCCAAATATTGTTGCCCTACGGCATTGTTTCTTCTCAACAACTGACAAAGAAGAAGTGTACTTGAATCTTGTCCTTGAATATGTTCCTGAAACTGTGAATCGTATCGCGAGGAGCTATAGCAGGATTAACCAGCGAATGCCATTGATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCACCGTGACATCAAACCTCAGAACCTACTTGTGAACCCGCATACTCATCAGCTGAAACTATGTGATTTTGGTAGTGCAAAAGTGTTGGTAAAAGGAGAACCAAATGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGACATATGGTCAACTGGCTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACTAGGGAGGAGATAAAGTGCATGAACCCTAATTATACTGAATTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCGTTGGAGGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGTCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAATCTCAGGAACTTTCTGGCATACCCCCTGATGTGATCAATCTTCTTATTCCAGAGCATGCACGTAAACAGAACTTATTTATGGCTTTGCACACTTAG 1263 0.445 MASASLGSGGVGSSRSVNAAFRGSSSSVDWLGREMLEMRLRDHDDDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKSQELSGIPPDVINLLIPEHARKQNLFMALHT* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2271 420 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2271 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Pvu6g2271 420 CDD STKc_GSK3 77 369 IPR039192 -
Pvu6g2271 420 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Pvu6g2271 420 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2271 420 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 417 - -
Pvu6g2271 420 SUPERFAMILY Protein kinase-like (PK-like) 81 393 IPR011009 -
Pvu6g2271 420 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 417 - -
Pvu6g2271 420 Pfam Protein kinase domain 84 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2271 420 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Pvu6g2271 420 Gene3D Transferase(Phosphotransferase) domain 1 162 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2271 Pvu-Chr6 31838591 31844247 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2271 88 374 Core Cell Cycle Gene Families AT1G76540 35.254 5.40e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pvu6g2271 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2271 K03083 - gmx:100799387 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2271 6 31838591 31844247 Pvu2g2466 2 40606704 40613808 PCT