Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2249 ATGTCAAGCGTCAACACCAGTGCTTACACCACCCAACTCCGAGCCTCTCACTTGGAAGTACAGTTTGGGTACGAGGAGTGTTGCCGCAACCATGCAGTGGCCGTAGGAGGAGCTTCCTACGATGGCTGCAACGAGTATCAGAAAGCAAGGTCGCAGAACTCTTTCCTCTGTGCATGCTGTGGTTGTCACCGCAACTTTCACCGCAAACGCCCTACTTTGAAAAGAGAGCGCCGAACTGAAGCAGGGAATGGTCGTGCTCTGGATATAGTTCCTGTTTCAGAGACGTTTCGCCCGGAGCGTAGCAACAACCCAGAGCCACTGCAGCTGGTGAGGCCACTGAGGAGGAGGAGGACGAGGTTCTCGCGCGACCAGAAGAAGCAAATGACGAGGTTTGCTGAGATATTGGGGTGGAAACCTCACAAGGGTAACAGGGAGGATATTCAACGTTTCTGCACTGACATGGGAATAAGCCGGAAGATCTTCGTGGTGTGGCTGAACAACAATCGTCACCGTGCAACTCCGAATGTGAGTGATCCATGA 540 0.5296 MSSVNTSAYTTQLRASHLEVQFGYEECCRNHAVAVGGASYDGCNEYQKARSQNSFLCACCGCHRNFHRKRPTLKRERRTEAGNGRALDIVPVSETFRPERSNNPEPLQLVRPLRRRRTRFSRDQKKQMTRFAEILGWKPHKGNREDIQRFCTDMGISRKIFVVWLNNNRHRATPNVSDP* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2249 179 Gene3D - 106 174 - -
Pvu6g2249 179 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 70 IPR006456 -
Pvu6g2249 179 SUPERFAMILY Homeodomain-like 109 171 IPR009057 -
Pvu6g2249 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 24 172 - -
Pvu6g2249 179 ProSiteProfiles 'Homeobox' domain profile. 111 175 IPR001356 GO:0003677
Pvu6g2249 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 172 - -
Pvu6g2249 179 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 114 169 IPR006455 -
Pvu6g2249 179 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 70 IPR006456 -
Pvu6g2249 179 Pfam ZF-HD protein dimerisation region 23 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2249 Pvu-Chr6 31704815 31705604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2249 22 170 ZF-HD Transcription Factor Family AT5G65410 33.708 6.14e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu6g2249 ZF-HD_dimer 7.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2249 - - vra:106775003 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2249 6 31704815 31705604 Pvu6g2249 6 31704815 31705604 ECH