Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2236 ATGTGTTGTTTGGTTGGGACTCAAATGAGACAAGGTGAAGCCAATTCAGTTCGGGTTGTTAAAGAGAATAACAAGAACTGGTTGCAGCATGCCAATGCCCACGAGAATTTCTCCTCCCAAGAGAAGTTTTTGAGCTCTAATTTTCTGCTCTCTGTCCCACCCAAGAAGCCCCGCCACCAGGAACCAAACCCTGGGACTTCCGGTTTTGTATTTCAACGAAGTGAAAATATTCAAGTTTCACAGAGAGTACAATTTGACAAGGCTTGGGATGTTCTTTCAAGTCTACAAAATTCTAGTAGGACCTATATACAACCCGGAAAAACTGTCAAGGTTACTCGGCAGATTCACGAGAATACGAGAACAACTCCCTTCCATGGAGGCTATGAGAATGACAACCGTACCTGTCCTGACGTCACTGCCGCTCCAGTTGTTAGCAGTCATAGTTCTCGCGGTTTGGATGGTTCAGTGAACAATCATAATAAGTACACAGGCCAAATCAATGAGTCTTCCAACTGCATGTCTGGAGATATTGATGATGATAACATACTTGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCAACCTGCACTCCCAAGCCATCAATATCCAAGCTTCCTCCTATAACACCAATTGCAGATAAAGATGATTTTGCTAGAGAGGGGGATAATGCTTTGCCACCAGACCTGTGTTTAGATTGCATCCATGGGTACAAGTTAGGGCTTTGCCCCGAAGCAGCAATTCATTTGCAGGAATTGAAGGATAATCTAATTGCAATCTCTAATGAACTGCTCGACAATGGTGAAAACCTCAATTCTACACAGATATCAAAACTTCGCCATGATAGGTCACAGCTGAATAAGCAAATTCAGCAACTAGAAAAATATATTCAATCTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACTGCACCATCCACATCATATGTGTATGGAACACCTCAGCAAACTGCCCCCTGTAATGGATCCAAGAGATACGATGCCCAGGCTTATATGGGTGACGGGACATTTGGTTCATCATTCCAGTCTCTTCCATCTTTTTCTATAGACAAGTATAGCACATTATCTGGTCCGGTGGAGCGAGAGGCCTTCATCCCAAAGATTATTGAAGTCAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCCATGATTTTTCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCATTCCTTTCGCCCCAATCAAAGAGAGGTCATCAATGCCACAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCGGCTCTTATTTGTCAAGGTATAACATTAGTAATCTCTCCCCTTGTGTCCCTTATTCAGGATCAAATAATGCACTTATTGCAGGCAAATATACCAGCTACTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAAATCCTCCGAGAACTTACTTCTGATTACTGTAAATACAAGTTATTATATGTGACACCTGAAAAGGTTGTCAAAAGTGATAATCTTTTGAGACACTTAGAGAATTTACATTTTCGCGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACTGCTAGTGTAAAAGAAGATGTCGTGCAAGCACTTGGTCTTGTTAACTGCGTTATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGAGAGAATCACTTTGATGAATGTGGCATTATCTATTGTCTTTCAAGAATGGACTGTGAAAAGGTCGCTGGCAATTTACAGGAATGTGGACATAAATGTGCATTTTATCATGGTAGCATGGATCCTCCTCAACGTGCCTTTGTTCAAAATCAGTGGAGCAAAGATGAAATTAATATAATTTGTGCTACTGTAGCATTTGGAATGGGTATTAATAAACCTGATGTCCGCTTTGTAATCCACCATTCTCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGCCGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTATAGTGATTATATACGAGTCAAGCATATGATAAGTCAAGGAGGAGCAATAGAGCAAAGTCCCCTGACATCTGGATACAACCGTTCAAATATGATAAATCCAGGAAGCATACTAGAAACAAACACTGAAAACCTCATGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGCCGGCGCCTTCTGCAGCTTGTTCATTTTGGAGAGAAGTTCAATTCTTCAACTTGTCACAAAACGTGTGATAATTGCTTGAAGATCACAAATTTCATTGAGAAGGATGTCACGGAGATAGCAAAGCAATTGGTTGAACTTGTTAAGCTAACTGGACAGAGGTTCTCATCATCTCATATATTAGAAGTTTATCGTGGTTCCTTTAGCCAAATGGTCAAGAAAAATCGGCACGAGACAGTGAGCCTTCATGCTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTCGAGGATATTCTTGTGGAAGAAGTAAAGAAAAGTGATTTTTATGGATCGATATCATCCATATTGAAGGTAAATGAGCCCAAGGTCTGTAATCTGTTTGCTGGGCACAGAATTATATTGAGATTTCCATCGTCTGTAAAGGCAACAAAACCAGGCAAATCTGATGCAACTCCAGCCAAGGGTTCTTTGACATCTGGAAAGCAGAATGTTTTTCCAATTGACACTCCTCAACCTCAAACTGAAGTGGATTTGAATCTTTCAGCCAAGTTATACACTGCTCTGCGTATGTTGAGGACAACTCTTGTTAAAGAAGCTGGAGACAGTGTTTTTGCTTACCACATATTTGGTAATGCCACGTTGCAGCAGATAAGCAAGAGAGTGCCAAGAACAAAAGAAGAACTCCTAGATATCAATGGCATTGGCAAGGCAAAGGTAAGCAAGTATGGGGATAAGATACTGGAAACCATTGAGAATACCATAAATGAATATTACAAGTTGGACAAAGGCAGTAGCGGCAGCAAAGGCAGTGCAGATTCTGCCAAGAGGAGACGAGATGGAGATCCAGATGCAGATGCTGATGAAGAAGCCCTCACCAATAGCACAGGTCGTTCTAAAAAAAGGACTATAAAGAGACAAAATAGAAAAGCTGTGATATATGATTCTGCAGATGAAGATTATTTTCATGGATGCCATGACGAAGACCTAGATTTTGACCTCATAGAAATTGATGCAATAGATCAAGTGACTTGTAAAAATGGTGATGGGAGAGTACTACCTCAATGGACAACATCTTGA 3504 0.4055 MCCLVGTQMRQGEANSVRVVKENNKNWLQHANAHENFSSQEKFLSSNFLLSVPPKKPRHQEPNPGTSGFVFQRSENIQVSQRVQFDKAWDVLSSLQNSSRTYIQPGKTVKVTRQIHENTRTTPFHGGYENDNRTCPDVTAAPVVSSHSSRGLDGSVNNHNKYTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTCTPKPSISKLPPITPIADKDDFAREGDNALPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNGENLNSTQISKLRHDRSQLNKQIQQLEKYIQSGNLNEERQKSHFSASTAPSTSYVYGTPQQTAPCNGSKRYDAQAYMGDGTFGSSFQSLPSFSIDKYSTLSGPVEREAFIPKIIEVNYIEGSGDKRWSSHDFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWTEQQEILRELTSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAGNLQECGHKCAFYHGSMDPPQRAFVQNQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGAIEQSPLTSGYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHAAGKHLAKGEASRILHHLVVEDILVEEVKKSDFYGSISSILKVNEPKVCNLFAGHRIILRFPSSVKATKPGKSDATPAKGSLTSGKQNVFPIDTPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQISKRVPRTKEELLDINGIGKAKVSKYGDKILETIENTINEYYKLDKGSSGSKGSADSAKRRRDGDPDADADEEALTNSTGRSKKRTIKRQNRKAVIYDSADEDYFHGCHDEDLDFDLIEIDAIDQVTCKNGDGRVLPQWTTS* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2236 1167 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 542 551 IPR002464 -
Pvu6g2236 1167 SUPERFAMILY HRDC-like 990 1063 IPR010997 GO:0000166|GO:0044237
Pvu6g2236 1167 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 129 1134 - -
Pvu6g2236 1167 SMART hrdc7 987 1069 IPR002121 GO:0003676
Pvu6g2236 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 752 IPR027417 -
Pvu6g2236 1167 SMART helicmild6 653 734 IPR001650 -
Pvu6g2236 1167 CDD DEXHc_RecQ 411 610 - -
Pvu6g2236 1167 Pfam RecQ zinc-binding 745 828 IPR032284 -
Pvu6g2236 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 878 IPR027417 -
Pvu6g2236 1167 MobiDBLite consensus disorder prediction 1070 1115 - -
Pvu6g2236 1167 Gene3D - 384 610 IPR027417 -
Pvu6g2236 1167 Gene3D - 835 944 IPR036388 -
Pvu6g2236 1167 Gene3D HRDC domain 986 1074 IPR044876 -
Pvu6g2236 1167 SMART ultradead3 416 619 IPR014001 -
Pvu6g2236 1167 Pfam RQC domain 834 946 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pvu6g2236 1167 Pfam Helicase conserved C-terminal domain 627 733 IPR001650 -
Pvu6g2236 1167 SMART RQC_2 837 947 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pvu6g2236 1167 Coils Coil 278 298 - -
Pvu6g2236 1167 MobiDBLite consensus disorder prediction 961 977 - -
Pvu6g2236 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 428 603 IPR014001 -
Pvu6g2236 1167 Gene3D - 611 830 IPR027417 -
Pvu6g2236 1167 CDD SF2_C_RecQ 611 743 - -
Pvu6g2236 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 790 IPR001650 -
Pvu6g2236 1167 PANTHER DNA HELICASE RECQ FAMILY MEMBER 129 1134 - -
Pvu6g2236 1167 MobiDBLite consensus disorder prediction 1080 1104 - -
Pvu6g2236 1167 ProSiteProfiles HRDC domain profile. 987 1069 IPR002121 GO:0003676
Pvu6g2236 1167 Pfam HRDC domain 991 1059 IPR002121 GO:0003676
Pvu6g2236 1167 Pfam DEAD/DEAH box helicase 422 590 IPR011545 GO:0003676|GO:0005524
Pvu6g2236 1167 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 412 888 IPR004589 GO:0004386|GO:0006310
Pvu6g2236 1167 MobiDBLite consensus disorder prediction 950 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2236 Pvu-Chr6 31635446 31643088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2236 642 766 Eukaryotic Initiation Factors Gene Family AT3G19760 23.622 9.21e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2236 K10901 - gmx:100800006 1914.04