Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2225 ATGGGAAGAAACGGAGGAGGAAGGTCTCTGCAACAAGCCCTCCGTCGCCGCATTGATACCTGCAAGTCCAAATACTCCACGGCGGAAGAAATCGCCAACCATCTCCGTTCGACTTACCCCGATTATCACCGAACTAAACACCAAACCCTAATTCGATTTGTTCAGGAAGCGGTTCATTCCACCGCGCAGCATAATCAAACTTCCACGCCGAAGTATTCCGATGGTGACGATGACGACAACATGGAGTCCCGAAGCGCGTCTCGAAAGCGTAGGAAGAAAATTGACGAGGGTGAAGAGAGGTTGAAGAAGATGGAAGCGTTACACGCGCGAAGGAGGGTGCAGGATCCTTCCTCGTCGTCCTCTGCTTCTTCGGAGAGTGATGATGAGGAAGCGGTGTCGACTTCGGAGGACGCAATTTACGGGGAGAAGGTGGAGCCTCAGTTTGATTTGATGAAGGAAATGCTAAGGAAGTCGTATACGCCGAAGAAGGTGGTGGCGGCGGCGGCGGTGGAAAAGAACGTTGAATTGGAGATGAGTAATAGAAGTAAAGGCACTGTTCTGAATGAGGTGAATGAGGTGCGGAAGCAATCTCTGCGTTCGGTTTCGAATAGTGAAGTTTCAAATGGTGAGGGGAAGGGGAAGGATGGACCGAGATTTAAGGATTTAGGTGGGATGAAGGAGGTTTTGGAGGAACTGAAGATGGAAGTAATTGTACCTTTGTTTCATCCCCAGTTGCCTAAGCAGTTAGGAGTGAAGCCAATGGCTGGCATTTTGTTGCATGGTCCACCTGGATGTGGGAAGACCAAACTTGCTCATGCTATAGCTAATGAGACTGGTCTTCCTTTCTATCAGATTTCAGCTACTGAGGTAGTCTCTGGAGTCTCAGGTGCATCTGAAGAAAATATTAGAGAACTTTTTGCTAAAGCTTACAGAACTGCACCTTCGATCGTCTTTATTGATGAGATTGATGCAATTGCTTCTAAAAGAGAGAATTTGCAGCGTGAGATGGAGAAACGAATTGTGACGCAATTAATGACTTGCATGGATCAATCAAGTAGGCTTCCAACGGATGATTCAGAGAGTGCTGGCTATGTTCTTGTAATAGGAGCTACAAATAGGCCTGATGCTGTTGACCCTGCCCTGAGAAGGCCTGGTCGGTTTGATCGTGAAATTATCATTGGTCATCCTGATGAATTTGCCAGGGAGGAGATCCTATCTGTGCTTACTTCCAATCTTAGACTTGAGGGTTTATTTGATCTACAGAAAATAGCCAGGGCTACATCAGGTTTTGTTGGTGCTGATTTGGCAGCTCTGGTTGACAAGGCTGGTAATTTGGCAATGAAGAGAATAATTGATGAAAGGAGACGTGAATTATCTGAAGAACTCACGAGCGAGCATGTTGAAGACTGGTGGAGGGAACCTTGGTCGGCTGAAGAAGTGGACAAGCTTGCCATCAAAATGTCCGATTTTGAGGAAGCATCCAAAAAGGTACAACCTTCATTAAGAAGAGAAGGATTCTCTATCATTCCTAATGTTAAATGGGAAGACGTTGGGGGCCTTGATCTCTTAAGGAAAGAGTTTGAACGATATATTGTAAGGCGAATAAAATATCCTGAAGATTATGAGGGGCTCGGGGTTGATCTTGAGACTGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACGCTGATTGCCAAAGCTGTTGCCAGTGAGGCAGGGGCTAGTTTTATCCATATCAAGGGTCCTGAACTTTTAAATAAATATGTTGGAGAAAGCGAGCTTGCAGTTCGGACATTGTTTAGCCGTGCAAGGACATGTGCACCTTGTATACTTTTCTTTGACGAGGTTGATGCTTTGACAACTAAACGTGGTAAGGAAGGTGGTTGGGTTATTGAACGACTGTTGAACCAGTTGCTTATTGAGTTGGATGGTGCAGGACATCGAAGAGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTCTCTTACGGCCTGGTAGATTTGGTAAACTTCTGTACGTTCCACTACCCAGCCCAGATCAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGAATAAGGCTATTGATGCCACTGTGGATTTGAGTGCGATGGCAACCATGGCAGGTTGTGAAAACCTAAGTGGCGCTGATCTTGCTGCATTGATGAATGAAGCGGCAATGGCTGCTGTGGAAGAGAAACATAAAACTATCAACAGTACTCATTTTGAAGTAGCACTAAGTAAAGTCTCGCCGTCAGTGTCTGACAGGCAAAAGAAGTACTATCAGCACTTGTCGGAGAGCTTTAAAGTAGCATGA 2334 0.4567 MGRNGGGRSLQQALRRRIDTCKSKYSTAEEIANHLRSTYPDYHRTKHQTLIRFVQEAVHSTAQHNQTSTPKYSDGDDDDNMESRSASRKRRKKIDEGEERLKKMEALHARRRVQDPSSSSSASSESDDEEAVSTSEDAIYGEKVEPQFDLMKEMLRKSYTPKKVVAAAAVEKNVELEMSNRSKGTVLNEVNEVRKQSLRSVSNSEVSNGEGKGKDGPRFKDLGGMKEVLEELKMEVIVPLFHPQLPKQLGVKPMAGILLHGPPGCGKTKLAHAIANETGLPFYQISATEVVSGVSGASEENIRELFAKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSSRLPTDDSESAGYVLVIGATNRPDAVDPALRRPGRFDREIIIGHPDEFAREEILSVLTSNLRLEGLFDLQKIARATSGFVGADLAALVDKAGNLAMKRIIDERRRELSEELTSEHVEDWWREPWSAEEVDKLAIKMSDFEEASKKVQPSLRREGFSIIPNVKWEDVGGLDLLRKEFERYIVRRIKYPEDYEGLGVDLETGFLLYGPPGCGKTLIAKAVASEAGASFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCILFFDEVDALTTKRGKEGGWVIERLLNQLLIELDGAGHRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDQRVLILKALARNKAIDATVDLSAMATMAGCENLSGADLAALMNEAAMAAVEEKHKTINSTHFEVALSKVSPSVSDRQKKYYQHLSESFKVA* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2225 777 CDD AAA 252 394 - -
Pvu6g2225 777 SMART AAA_5 253 397 IPR003593 -
Pvu6g2225 777 SMART AAA_5 548 684 IPR003593 -
Pvu6g2225 777 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 45 773 - -
Pvu6g2225 777 MobiDBLite consensus disorder prediction 197 220 - -
Pvu6g2225 777 Pfam AAA+ lid domain 705 749 IPR041569 -
Pvu6g2225 777 Pfam AAA+ lid domain 418 453 IPR041569 -
Pvu6g2225 777 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Pvu6g2225 777 CDD AAA 551 682 - -
Pvu6g2225 777 Gene3D - 683 753 - -
Pvu6g2225 777 MobiDBLite consensus disorder prediction 113 128 - -
Pvu6g2225 777 Pfam ATPase family associated with various cellular activities (AAA) 257 394 IPR003959 GO:0005524|GO:0016887
Pvu6g2225 777 Pfam ATPase family associated with various cellular activities (AAA) 553 681 IPR003959 GO:0005524|GO:0016887
Pvu6g2225 777 MobiDBLite consensus disorder prediction 60 138 - -
Pvu6g2225 777 Gene3D - 510 767 IPR027417 -
Pvu6g2225 777 Gene3D - 212 394 IPR027417 -
Pvu6g2225 777 PANTHER AAA-FAMILY ATPASE 45 773 - -
Pvu6g2225 777 MobiDBLite consensus disorder prediction 71 112 - -
Pvu6g2225 777 ProSitePatterns AAA-protein family signature. 652 670 IPR003960 GO:0005524|GO:0016887
Pvu6g2225 777 Gene3D - 396 504 - -
Pvu6g2225 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 773 IPR027417 -
Pvu6g2225 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2225 Pvu-Chr6 31528150 31533021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2225 483 775 Calmodulin-binding Proteins AT3G56690 43.771 2.75e-68 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2225 K14571 - gmx:100809594 1221.84