Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2209 ATGGCAACAAAAGCAAAGGAATCCTTTTCTTGTGCCTCCAATCCTAGGCCATTCCTCTTCATCACGCACCCCTTTTTCATATCAAAACCATATAATACTTCCACCTTCTTCTGTCATAAAAACCTCGCTTCTTCCTCAAAACACACCAACCTTTTCACCCCAACACAGACACAATCCATGTCTCTAACAGGTCGTTCTCGTGTTGTTGTGAATGGGGTTAGAAGAACCAGAACTTTTCACTATTTCTGGTGCCTATATTGCCAAAGAACCGTGAGGTTACCCTTCACAAACAGTGATGGTTCCATATGCCCCTATTGCTTCCACCATCTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACCTGCAACCTTCACCAGCTACTCAGCTTTTGGATAGCTTGGCCCTTGTTCTTGATCCACCTCTAAGGAGGCAGAACAACAACCATTTCAACACAACCACACAATGGGAAACAGAGAATGAACATGGTTCAGATCACCATGCTTGGATTACACTTCGTTTTCCAAGGCCAACTCGTGCAGATAGGCCTATTTTTTCAGATGATGACTTCATTAATGGGGTGATTGAGAACAGTAATAGAACAAGGCCACCTCCAGCAGCATCTTCTGCCATTTCTGCATTGCCAGTGGTGAAACTGACACAAGCCCATTTGGCAAGTGACCCCAATTGCCCTGTTTGCAAAGATGAGTTTGAGGTTGAGATGGAAGCCAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGACTGCATCATCCCTTGGCTGCGCATGCACAACACTTGCCCTGTGTGCCGCTACGAGCTGCAAGGTGTGGTTACTCCTGATGCTAATTACAGTTTCCAAAGAGATGAGAATGACCTGAGTTTTGCGTTTGAGGAGATCTCAAACAGCTTGAGCTGGGTTTGGAACCACTTGTTTTCATTCTCGCCTATCCGTTCAGTCCTAGATTGGACACGCTCCTACTTTGATTTCCATGAAAATCGTCTTCGTGGTCGTGAAGGAAAACAAACTCTCCAAGCAAACAAAACTCATGAAAAGATGCCTACTACTTACACAAAACCGCACACATTGCTAGCTAAAAACCAACCCCGGAAAACCACCACATAA 1146 0.4494 MATKAKESFSCASNPRPFLFITHPFFISKPYNTSTFFCHKNLASSSKHTNLFTPTQTQSMSLTGRSRVVVNGVRRTRTFHYFWCLYCQRTVRLPFTNSDGSICPYCFHHLRYELDISRPRLLMNVPNNLQPSPATQLLDSLALVLDPPLRRQNNNHFNTTTQWETENEHGSDHHAWITLRFPRPTRADRPIFSDDDFINGVIENSNRTRPPPAASSAISALPVVKLTQAHLASDPNCPVCKDEFEVEMEARELPCKHFYHSDCIIPWLRMHNTCPVCRYELQGVVTPDANYSFQRDENDLSFAFEEISNSLSWVWNHLFSFSPIRSVLDWTRSYFDFHENRLRGREGKQTLQANKTHEKMPTTYTKPHTLLAKNQPRKTTT* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2209 381 Pfam Ring finger domain 236 278 IPR001841 -
Pvu6g2209 381 MobiDBLite consensus disorder prediction 346 381 - -
Pvu6g2209 381 MobiDBLite consensus disorder prediction 367 381 - -
Pvu6g2209 381 CDD RING-H2_RNF126_like 237 278 - -
Pvu6g2209 381 SMART ring_2 237 277 IPR001841 -
Pvu6g2209 381 SUPERFAMILY RING/U-box 217 282 - -
Pvu6g2209 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 330 - -
Pvu6g2209 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Pvu6g2209 381 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Pvu6g2209 381 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 80 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2209 Pvu-Chr6 31433203 31434757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2209 60 337 C3H Transcription Factor Family AT1G68180 33.910 3.96e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2209 K11982 - gmx:100793656 423.32