Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2197 ACACCACTTTGGCGTAATGGACCAGCTGAGAAACCTGTGTTGTGCAACGCTTGTGGATCACGATACAAGTTGAAAGGGCACCTTCAGAATTATCTCCCCAAACACCACAAGTACTATGGCGAACTTCATCTCAATGTTGAAGACCAACTTTCAGAACATAATGGAAGCAGCAATGAATCAAGCCCAGATCTTCATTATGTATCAGAACAAGATTTTGGGAACATCCCTACAAGGAAACGGTCCGAGGTGGTGTACAGGGAGATGACACCATTGGAGAGGTTTGAAAAGCAGCTTCTGAGTTTGTATAGAAGTGAAAAGCAACCAAAGGAGAGATTCCCAGAAGAGGATACATTGGTGGATAACGTCAACAACTTCATACCCACCACTGAGATAGGGCTTGGACTCGTTCTTCTAAGACAGATCAGGGATCATTCAGATTTTCATTTCTGA 450 0.4356 TPLWRNGPAEKPVLCNACGSRYKLKGHLQNYLPKHHKYYGELHLNVEDQLSEHNGSSNESSPDLHYVSEQDFGNIPTRKRSEVVYREMTPLERFEKQLLSLYRSEKQPKERFPEEDTLVDNVNNFIPTTEIGLGLVLLRQIRDHSDFHF* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2197 149 MobiDBLite consensus disorder prediction 49 73 - -
Pvu6g2197 149 MobiDBLite consensus disorder prediction 49 67 - -
Pvu6g2197 149 CDD ZnF_GATA 1 41 IPR000679 GO:0006355|GO:0043565
Pvu6g2197 149 PANTHER OSJNBB0038F03.10 PROTEIN 1 139 IPR044589 -
Pvu6g2197 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1 32 - -
Pvu6g2197 149 Pfam GATA zinc finger 1 27 IPR000679 GO:0006355|GO:0043565
Pvu6g2197 149 Gene3D - 1 60 IPR013088 GO:0006355|GO:0008270
Pvu6g2197 149 ProSiteProfiles GATA-type zinc finger domain profile. 1 26 IPR000679 GO:0006355|GO:0043565
Pvu6g2197 149 PANTHER GATA ZINC FINGER PROTEIN 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2197 Pvu-Chr6 31351755 31352987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2197 1 48 C2C2-Gata Transcription Factor Family AT5G47140 62.500 3.10e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu6g2197 GATA 1.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2197 - - var:108341731 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2033 2 35619515 35622868 Pvu6g2197 6 31351755 31352987 PCT
Pvu6g2197 6 31351755 31352987 Pvu2g2582 2 41764051 41765009 PCT