Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2159 TTGCCTCCTGCTGTGTCTTTTGGTGAGGACCAAACCAAGGATTCTCACTGTGATTGTCCTATTTGCTTGGAAGAATTTAAGCATGGAGACTTCATTCAACCATTTGGAGTGTGTGCACATCAATTTCATTCCTCCTGCCTTAAGTCTTGGTTGCTCAGTCAAAAAACTTCATGTCCACTTTGTCGTGTCGAGTTGCTAATTCCTATCACAGTATAA 216 0.4167 LPPAVSFGEDQTKDSHCDCPICLEEFKHGDFIQPFGVCAHQFHSSCLKSWLLSQKTSCPLCRVELLIPITV* 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2159 71 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 11 65 - -
Pvu6g2159 71 PANTHER RING FINGER DOMAIN-CONTAINING 11 65 - -
Pvu6g2159 71 SUPERFAMILY RING/U-box 15 68 - -
Pvu6g2159 71 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 66 IPR013083 -
Pvu6g2159 71 ProSiteProfiles Zinc finger RING-type profile. 19 62 IPR001841 -
Pvu6g2159 71 SMART ring_2 19 61 IPR001841 -
Pvu6g2159 71 Pfam Ring finger domain 18 62 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2159 Pvu-Chr6 31073121 31073336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2159 4 68 C3H Transcription Factor Family AT4G38140 43.077 8.87e-13 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2159 - K19040 pvu:PHAVU_006G208700g 158.688