Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2158 ATGGGAGACACCAATGTCAACCTTCCACCAGGCTTTCGATTCTATCCCACAGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAAGCCTCACTTTTGCCTTGCCACCCTGATGTCATCCCTGATCTTGAGGTCTACCAATATGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAACCAATGGTACTACTACAGCAGAAGGACACCAAATAGGGTCACTGGCAATGGGTATTGGAAACCAACGGGAATGGAAGAGCCAGTCGTTTCAAGCTCAAACAGCAAGAGAGTTGGCATGAAGAAATATTTTGTGTTTCATGTAGGAGAAGCTGCTACTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCTACCAGATCATCCAAAAGAAAACCTCAACCAAAAGCAGATTACAATAAATGGGTGATATGTCGTGTTTATGAGCGTAATGGAGAGGATGACAATGGAACAGAGCTCTCATGTTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATAAGCTTACCAAATTAG 570 0.4228 MGDTNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYQYDPWELDGRALAEGNQWYYYSRRTPNRVTGNGYWKPTGMEEPVVSSSNSKRVGMKKYFVFHVGEAATGIKTNWIMQEYRLSDSASSTRSSKRKPQPKADYNKWVICRVYERNGEDDNGTELSCLDEVFLSLDDDLDEISLPN* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2158 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Pvu6g2158 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Pvu6g2158 189 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 185 - -
Pvu6g2158 189 PANTHER NAC TRANSCRIPTION FACTOR 56 5 185 - -
Pvu6g2158 189 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
Pvu6g2158 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2158 Pvu-Chr6 31067595 31069219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2158 1 173 NAC Transcription Factor Family AT1G61110 41.667 8.33e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu6g2158 NAM 9.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2158 - - gmx:100793989 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2121 2 36609473 36610869 Pvu6g2158 6 31067595 31069219 PCT