Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2149 ATGGATGTTCTCAGATTCACCTCAAACCCTGCCACCACTCACATGCTTCCACTCTCAAAAAAACACCAAACACAACCTCCTCGTACCAAGTTCTCTGTTTCATGCAGAGCCACAAAACTTAAGCCATGTGTGGAGGAGAACTTGTACAAGGTTCTGAGTTTGAGTCCCGTGAGTGCAACCACAGAAGACATAAAGAAGGCGTATAGATCAATGGCTCTTCAGTACCACCCTGACGTGTGCCATGATGGTTCCAAGAAAGAAGAGTTGACGAGGATGTTTGTGCAACTGAACGCAGCCTACGCCACCTTGTCCAACCCAGAGCTTCGAGCAGATTATGATTATGAGTTGGGTTTGAGAACCAAGAAAAGTGTGGCAGATGAGAGGTGGAGAAGTAGGTGGCAGGAGCAGGTGGTTGAGTTGAAGAGAAAGTCTCACACACGCATGGCACAGAGGGAGGGTTCGTGGGGTTGTAGAGTCAGAGCACAAAACATGAATTGA 498 0.4779 MDVLRFTSNPATTHMLPLSKKHQTQPPRTKFSVSCRATKLKPCVEENLYKVLSLSPVSATTEDIKKAYRSMALQYHPDVCHDGSKKEELTRMFVQLNAAYATLSNPELRADYDYELGLRTKKSVADERWRSRWQEQVVELKRKSHTRMAQREGSWGCRVRAQNMN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2149 165 CDD DnaJ 47 105 IPR001623 -
Pvu6g2149 165 ProSitePatterns Nt-dnaJ domain signature. 93 112 IPR018253 -
Pvu6g2149 165 ProSiteProfiles dnaJ domain profile. 47 116 IPR001623 -
Pvu6g2149 165 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 7 165 - -
Pvu6g2149 165 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 7 165 - -
Pvu6g2149 165 SMART dnaj_3 46 108 IPR001623 -
Pvu6g2149 165 PRINTS DnaJ domain signature 50 68 IPR001623 -
Pvu6g2149 165 PRINTS DnaJ domain signature 68 83 IPR001623 -
Pvu6g2149 165 PRINTS DnaJ domain signature 88 108 IPR001623 -
Pvu6g2149 165 Pfam DnaJ domain 47 113 IPR001623 -
Pvu6g2149 165 SUPERFAMILY Chaperone J-domain 42 112 IPR036869 -
Pvu6g2149 165 Gene3D DnaJ domain 34 144 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2149 Pvu-Chr6 31000117 31000874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2149 49 113 C2H2 Transcription Factor Family AT1G74250 43.284 1.25e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2149 - - var:108323614 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g2149 6 31000117 31000874 Pvu6g2149 6 31000117 31000874 ECH
Pvu2g2131 2 36727159 36727894 Pvu6g2149 6 31000117 31000874 PCT