Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2142 ATGAATATTTCATTCATCATCAATGTGGTTCTTCTACTTGCCATTATATTGATCTTGCTGCTTTACTATAACACATCCACAAAGCTCAATAAAATAGCAAAGGGGCAGATTCCATCTGCCATAGAAAAAGAGGATGACGTGGAGATCAGTGTTGACAAGAAGAAGATAGAGATAGGAGAGGGGACAATGATTATGACAGTGGAAGAGAGAAAGGAACTGATATTCTTTAGTGATAAGCCAAAGTTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGGCACTAGGTCATGGGATATTGGGAAACAGTTACAAGGCTATGCTCAATAGTGGAACTACCATTGTGGTTAAACGGCTAAGGGACTTGAAGCCATTCACTAAGGAGGAATTTGCCAAGATATTAAATGCCATTGCTGATATGAAGCACCCCAATTTGTTGCCCTTGCTTGCTTACTACCACTCTAGAGATGAGAAACTCATGCTTTACTCCTATGCAGCCAATGGAAATCTTTTCACCCGACTTCATGATAGAGATGGAAACCGGGCTCCGTTCAGTTGGAACTCGAGATTGTCGGTTGCAAGAGGAGTGGCTCGAGCATTGGTGTACCTGCACCTCAACCACAAGTTCCAAAACATTGTTCCACACGGCAACTTGCGGTCTTCAAACGTACTATTCGATGAAAACGATGCGGTTCTTGTTTCTGACTTCGGTCTTGCCTCCTTGATAGCACAACCAATCGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGGTACGCAAGAAAGGTGACAATGCAATCCGATGTGTGGAGCTATGGTTCACTTTTGATAGAGCTTCTAACGGGCAAAGTATCTATCAACTCAGCTCCACAGGGAACGAATGGGGTGGATCTATGCAGTTGGGTTCACAGAGCTGTGAGGGAAGAATGGACGGCTGAGATCTTCGACAAAGAAATCTCTGGCCAGAAGAGGGCACTTCCTGGGATGCTGAGGCTGTTGCAGATTGCAATGCGTTGCATTGAGAGGTTCCCTGAGAAGCGTCCTGAGATGAGAGAGGTGATGAGAGAAGTGGAGAAAATACAGGCCCCAGTGATCTCTGAAGATGATGATGATGTGTCTGGAGATAGGTCTCTAACTGATGACTCCCTTTCAACCAGTACCTCTATGATTGGAGATGAAAGATAG 1191 0.445 MNISFIINVVLLLAIILILLLYYNTSTKLNKIAKGQIPSAIEKEDDVEISVDKKKIEIGEGTMIMTVEERKELIFFSDKPKFQMGELLRASAEALGHGILGNSYKAMLNSGTTIVVKRLRDLKPFTKEEFAKILNAIADMKHPNLLPLLAYYHSRDEKLMLYSYAANGNLFTRLHDRDGNRAPFSWNSRLSVARGVARALVYLHLNHKFQNIVPHGNLRSSNVLFDENDAVLVSDFGLASLIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELLTGKVSINSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISGQKRALPGMLRLLQIAMRCIERFPEKRPEMREVMREVEKIQAPVISEDDDDVSGDRSLTDDSLSTSTSMIGDER* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2142 396 Gene3D Phosphorylase Kinase; domain 1 60 164 - -
Pvu6g2142 396 PANTHER RECEPTOR-LIKE KINASE 3 393 - -
Pvu6g2142 396 Pfam Protein tyrosine and serine/threonine kinase 93 358 IPR001245 GO:0004672|GO:0006468
Pvu6g2142 396 PANTHER OS05G0588300 PROTEIN 3 393 - -
Pvu6g2142 396 MobiDBLite consensus disorder prediction 360 396 - -
Pvu6g2142 396 MobiDBLite consensus disorder prediction 360 374 - -
Pvu6g2142 396 MobiDBLite consensus disorder prediction 380 396 - -
Pvu6g2142 396 SMART serkin_6 89 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g2142 396 Gene3D Transferase(Phosphotransferase) domain 1 165 372 - -
Pvu6g2142 396 SUPERFAMILY Protein kinase-like (PK-like) 93 363 IPR011009 -
Pvu6g2142 396 ProSiteProfiles Protein kinase domain profile. 89 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2142 Pvu-Chr6 30954856 30957002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2142 53 388 Receptor kinase-like Gene Family AT2G36570 39.496 6.32e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pvu6g2142 PK_Tyr_Ser-Thr 4.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2142 - - gmx:100816006 620.157