Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2130 ATGGAAGACGCAGCGTTGAAGCTGGAGTCCCTTGCGTGCATAGACTCAACCACACTCTCTCACTCTGAGCTCCTCGCCCTTTCTCTCTCCTCTCTCTGCACCTTCGACCTTCGCGCCACCAATCACCTCGTCACTCCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCCGGCTCCCGCCGCCAGACCTACTCCCGCCCCCAGTCCTCCCCCACGGGACGCCGTCGCCGCCTCGCCGGCCTCCTCCCCGCACCCAAGCTCCCTCCCCTCCCTGCTCACGACCCCGAGAACGCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGAGGACCCGAAGTTCGACCAGGTCCACCTCGCTCCCCCTTCACTTCCCCAACCCACCGTCAAGCGCAAGCGAGGCCGCAAGCCCAAGCTCAAACACCACCTCGAACACTGCTACCGCGGAATCGACGTTCTTAACCGAAACGGCGTCGCCGTTGATCTCTCGCAATTGGCCACCTCCCAAGACCCCTTCGCCTATGAGCTCAAGAGACGCACTGAGGGCTTGAGCAACGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGCCTGGCCAGTGGGGGAGCCGTAGGAAGAAGCGGAGGATTGTTGATGCTGCGGATTTCGGCGATGTGTTGCCGCTCAGTTGGAAGATTCTTCTCGGTTTGAAGAGGAAGGACGGTCGTGCCTGGATCTATTGCCGCAGATACATTAGCCCTAGTGGACAGCATTTTGTGTCTTGTAAAGAGGTTTCTTCGTATTTGCAGTCTCTTCTGGGTAATGGTGATGCACAGCCGCAAAGTAGTCGTAGGAGTGAAAATGTGGTGCAGGAACAGATAGTGCCTGCTGAAAATTCTGCTGGTGTCACTCCTGAACGTCAAGATCAGAGGCAGATTATTGCCGTGAACACGGAGGTGCCTGGTTTGTTTGCGGCTGCTAATGAACGAGTGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTTGCAGATGTGCAGATTCATGATCTGTTTGAATGTCGCAAGTGCAATATGAGTTTTGACGAGAAAGATTCGTACTTGCGACACCTGTTGTCCGTTCACCAGAGGACGACGAGGCGGTACCGGCTCGGTTCGTCTGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTAGAAAGGCGTCGCTACAATGGTCATGTGGGGATTCATGTTAGGAATTATGTGAGGAGGGTCGAAGATTCACCAGGTCAGATAAATGTCCAGAGGACAGATGACAAGTCTCCAGTCAGGGAGGACGTGCCTTTAAGGATATCTAAGATGGATGCCCTAATTGAAATTGCTCAAAACTCTATTATGGAGGGTTCTGTCACGGAACCCCATCATTTAGCTAAACTGAATGAGATTCCTGCTTCGGATATTGCTGTTGGTTGCTTGGACCACCACGGAAAAGAGTCTCCAATCAGTGAAAAACAGATGGAAGATAGCTTGACTAGAAAAAATGTGGATCATCATAATATGGATGGAAAGGTAGAGGAAATTGATGATGATAACCATGTGATAGATGTAAAAATGGTTACTTTTCTTGATAACATGAGTTTGTTATCTGTAAATATGCAAGATGTTAAAGCATCGGAGACTTCTGACGCAAAAGATGATGTAGAATTGACCATTGAGGACCTGGATCAATCTGGGATTGATTTGGATGGTGTTACTGAAGTTCGTTTACTTCCTTTATCTGAACTTAACATGATACCAGAATCTGAAAAGAGTGAAAATTCTGGATGTTCTAATACTAGGGTTCAGTTTAAACTTGATGAAGACATTAGTAACAAGAGTGAGTTGGAATTTGGTAATTGCTTGAAGGATGTACCTGTTACCGTTAGCACTAATGTCCAAGAGATGGGAATGACAGCTTCTGAAGAAAATGTGCTACATTCTAGGGCTTTTAACTCCTCTATATCCACAGAACAATCTTTGGATTGTTTGCCTGCATTCAGCTCTGATAAGGGAGGAAAACAGTTTTGCAGTCTTGACAATGAATATGATAATGTGAAGGGTCTCCAGGAATTGAGGTTTGATGAAATAGATAATGTTGATTATGATTTTGCAAGGGTTCAGGATTCTCCTTCTCTGCCGGCTGTATCAACTGAATTGGCCAATATCAGAGTGATGGAAGAGACGTATGCATCCTCAGTTCAGTTTGAATCACAGGAGGGCATGCTAAATATTGGTGGCAGAGATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGAAGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAAGCAAAAATCTCTGGTCAAATCAACGTGTTGGACTGTGAATAG 2424 0.4728 MEDAALKLESLACIDSTTLSHSELLALSLSSLCTFDLRATNHLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKLPPLPAHDPENAENRLIIDYLKQLIREDPKFDQVHLAPPSLPQPTVKRKRGRKPKLKHHLEHCYRGIDVLNRNGVAVDLSQLATSQDPFAYELKRRTEGLSNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLGNGDAQPQSSRRSENVVQEQIVPAENSAGVTPERQDQRQIIAVNTEVPGLFAAANERVKEVALLGIENLADVQIHDLFECRKCNMSFDEKDSYLRHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQINVQRTDDKSPVREDVPLRISKMDALIEIAQNSIMEGSVTEPHHLAKLNEIPASDIAVGCLDHHGKESPISEKQMEDSLTRKNVDHHNMDGKVEEIDDDNHVIDVKMVTFLDNMSLLSVNMQDVKASETSDAKDDVELTIEDLDQSGIDLDGVTEVRLLPLSELNMIPESEKSENSGCSNTRVQFKLDEDISNKSELEFGNCLKDVPVTVSTNVQEMGMTASEENVLHSRAFNSSISTEQSLDCLPAFSSDKGGKQFCSLDNEYDNVKGLQELRFDEIDNVDYDFARVQDSPSLPAVSTELANIRVMEETYASSVQFESQEGMLNIGGRDQLTTVCVWCGIEFNHEAVNSEIQPDSVGFMCPACKAKISGQINVLDCE* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2130 807 MobiDBLite consensus disorder prediction 56 72 - -
Pvu6g2130 807 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 1 803 - -
Pvu6g2130 807 Gene3D Classic Zinc Finger 336 418 - -
Pvu6g2130 807 MobiDBLite consensus disorder prediction 54 76 - -
Pvu6g2130 807 ProSiteProfiles Zinc finger C2H2 type domain profile. 393 420 IPR013087 -
Pvu6g2130 807 ProSiteProfiles Zinc finger C2H2 type domain profile. 346 374 IPR013087 -
Pvu6g2130 807 SUPERFAMILY beta-beta-alpha zinc fingers 345 415 IPR036236 -
Pvu6g2130 807 SMART c2h2final6 346 369 IPR013087 -
Pvu6g2130 807 SMART c2h2final6 393 415 IPR013087 -
Pvu6g2130 807 ProSitePatterns Zinc finger C2H2 type domain signature. 395 415 IPR013087 -
Pvu6g2130 807 ProSitePatterns Zinc finger C2H2 type domain signature. 348 369 IPR013087 -
Pvu6g2130 807 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 803 IPR037472 -
Pvu6g2130 807 MobiDBLite consensus disorder prediction 122 141 - -
Pvu6g2130 807 SUPERFAMILY DNA-binding domain 218 266 IPR016177 GO:0003677
Pvu6g2130 807 MobiDBLite consensus disorder prediction 271 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2130 Pvu-Chr6 30861567 30866261 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu6g2130 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2130 - - var:108341719 1263.06