Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g2123 ATGGAAAACGACGACGTTGACATGCACGCCGACGCTAATGAAGAATTGGATGACATGAAGAAGCGTTTGAAAGAGATGGAGGATGAAGCCGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTGCAAGATCCTGCAACTGCTTCTGCCAGTCAGGCCAATAGAGAGGAAGTAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCGTGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTTGAGTTCCTTGAGGTGGAAGCTGTTCAAGAGGCACTTTCGCTAAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTGACAGCTAAAAGGACCAATGTACCAGGGATGAAACAGTATCGGTCCCGCCAGTCAAATCCTTATGCTGGAGGCTTTCGAGGCAGAACCCCTTATGCACCTCCCTTTATCTATTCTCCATATGGACATGGAAAGGTCCCAAGGTTCCGAATGGCAATGCGCTACAGCCCCTACTATTAA 588 0.4728 MENDDVDMHADANEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQYRSRQSNPYAGGFRGRTPYAPPFIYSPYGHGKVPRFRMAMRYSPYY* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g2123 195 CDD RRM_II_PABPs 67 138 - -
Pvu6g2123 195 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 5 192 - -
Pvu6g2123 195 Coils Coil 9 43 - -
Pvu6g2123 195 Gene3D - 2 139 IPR012677 -
Pvu6g2123 195 SMART rrm1_1 67 138 IPR000504 GO:0003723
Pvu6g2123 195 MobiDBLite consensus disorder prediction 49 63 - -
Pvu6g2123 195 MobiDBLite consensus disorder prediction 40 63 - -
Pvu6g2123 195 MobiDBLite consensus disorder prediction 1 22 - -
Pvu6g2123 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 142 IPR000504 GO:0003723
Pvu6g2123 195 SUPERFAMILY RNA-binding domain, RBD 54 166 IPR035979 GO:0003676
Pvu6g2123 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Pvu6g2123 195 PANTHER - 5 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g2123 Pvu-Chr6 30807497 30812151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g2123 67 137 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 4.44e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g2123 K14396 - gmx:100791351 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2163 2 37050666 37056070 Pvu6g2123 6 30807497 30812151 PCT